Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_G16
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28413-1|AAA82605.1|  396|Homo sapiens CSA protein protein.            31   3.6  
CR536563-1|CAG38800.1|  396|Homo sapiens CKN1 protein.                 31   3.6  
BT020021-1|AAV38824.1|  396|Homo sapiens Cockayne syndrome 1 (cl...    31   3.6  
AY213194-1|AAO21128.1|  396|Homo sapiens Cockayne syndrome 1 (cl...    31   3.6  

>U28413-1|AAA82605.1|  396|Homo sapiens CSA protein protein.
          Length = 396

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 604 DTRMSIWRTKSKLKGSPVSIKEFLTKSRQAVFGKSRQYFGVRQ--CWTQDGVIIIKTANG 431
           D+R+ +W  + +  G  +++ +   K  QAV   +  + G     C+T DG+ ++     
Sbjct: 208 DSRVKLWDVR-RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266

Query: 430 NRHRLTTMDEFSDLAVKY 377
           NR RL       +  V Y
Sbjct: 267 NRMRLWNSSNGENTLVNY 284


>CR536563-1|CAG38800.1|  396|Homo sapiens CKN1 protein.
          Length = 396

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 604 DTRMSIWRTKSKLKGSPVSIKEFLTKSRQAVFGKSRQYFGVRQ--CWTQDGVIIIKTANG 431
           D+R+ +W  + +  G  +++ +   K  QAV   +  + G     C+T DG+ ++     
Sbjct: 208 DSRVKLWDVR-RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266

Query: 430 NRHRLTTMDEFSDLAVKY 377
           NR RL       +  V Y
Sbjct: 267 NRMRLWNSSNGENTLVNY 284


>BT020021-1|AAV38824.1|  396|Homo sapiens Cockayne syndrome 1
           (classical) protein.
          Length = 396

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 604 DTRMSIWRTKSKLKGSPVSIKEFLTKSRQAVFGKSRQYFGVRQ--CWTQDGVIIIKTANG 431
           D+R+ +W  + +  G  +++ +   K  QAV   +  + G     C+T DG+ ++     
Sbjct: 208 DSRVKLWDVR-RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266

Query: 430 NRHRLTTMDEFSDLAVKY 377
           NR RL       +  V Y
Sbjct: 267 NRMRLWNSSNGENTLVNY 284


>AY213194-1|AAO21128.1|  396|Homo sapiens Cockayne syndrome 1
           (classical) protein.
          Length = 396

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 604 DTRMSIWRTKSKLKGSPVSIKEFLTKSRQAVFGKSRQYFGVRQ--CWTQDGVIIIKTANG 431
           D+R+ +W  + +  G  +++ +   K  QAV   +  + G     C+T DG+ ++     
Sbjct: 208 DSRVKLWDVR-RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266

Query: 430 NRHRLTTMDEFSDLAVKY 377
           NR RL       +  V Y
Sbjct: 267 NRMRLWNSSNGENTLVNY 284


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,066,946
Number of Sequences: 237096
Number of extensions: 1461921
Number of successful extensions: 6626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6626
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)