Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_G16
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U12966-7|AAK84534.1|  352|Caenorhabditis elegans Dumpy : shorter...    28   5.0  
Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    28   6.7  
AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical ...    28   6.7  

>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -1

Query: 638 SPPNPGQIEMLRYTDVDLEDEVQT*RFSCVHQGIPYK-ISTGGVRQEPSVFWCASMLDAR 462
           S  NP   ++    DV  + E+    + C H  +P + +S+  +R++    WC  M   +
Sbjct: 677 SEENPKTDDIQSKDDVTSKSELHC--YRCEHYQLPAEEVSSHNIRKDNGDLWCEHMKKIK 734

Query: 461 RGHYYQDCEWKSSQIDH 411
            GH    CE    Q  H
Sbjct: 735 CGH----CEATGEQGHH 747


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -1

Query: 638 SPPNPGQIEMLRYTDVDLEDEVQT*RFSCVHQGIPYK-ISTGGVRQEPSVFWCASMLDAR 462
           S  NP   ++    DV  + E+    + C H  +P + +S+  +R++    WC  M   +
Sbjct: 674 SEENPKTDDIQSKDDVTSKSELHC--YRCEHYQLPAEEVSSHNIRKDNGDLWCEHMKKIK 731

Query: 461 RGHYYQDCEWKSSQIDH 411
            GH    CE    Q  H
Sbjct: 732 CGH----CEATGEQGHH 744


>U12966-7|AAK84534.1|  352|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 17 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 513 CSARAVSILVCVNVGRKTGSLLSRLRMEIVTD*PLW 406
           C+  AVS+L+CV++  +    +S LR E+ T+   W
Sbjct: 10  CTLGAVSMLLCVSLVPQVYQQVSMLRDELTTEMEAW 45


>Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical
           protein F49B2.1 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 485 TKILTALAEHRLSRFCKEFLDGHRRTFKFGLRPP 586
           T++  A  +H   +FCKEF     RT  FG   P
Sbjct: 117 TELFIASFDHDSEQFCKEFEGLKFRTLSFGSNDP 150


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
 Frame = +2

Query: 386 CEVAKLIHSGQSVTISIRSLDNNDPVLRPTLTHTKIL--------TALAEHRLSRFCKEF 541
           CE+  +  SG  + I+  ++DN   VL  T   T ++        T LA     +FC+++
Sbjct: 490 CELIVVAKSGTQMAITKINVDNPAFVLHSTTALTLLILIILCLIFTMLAILVCRKFCEKW 549

Query: 542 LDGHRRT 562
             GHRR+
Sbjct: 550 KTGHRRS 556


>AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical
           protein C52E2.5 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 359 LTIHNRIFNCEVAKLIHSGQSVTISIRSLDNND 457
           L I N +  C++ KL+H  + V I +RS+ + D
Sbjct: 552 LEIENCVVECDIEKLVHFSK-VDIRLRSISSED 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,011,406
Number of Sequences: 27780
Number of extensions: 235522
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)