Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_G13
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.4  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   3.1  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    27   3.1  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   7.2  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   9.5  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   9.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.5  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 410  SLGILVTVIDLPTNDSGRALLDGFAGFIVIPQ 315
            +L IL  V ++  N++ + LL+GF+  I +PQ
Sbjct: 4392 NLKILSAVHEIHLNETEKILLEGFSKIICLPQ 4423


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 6/141 (4%)
 Frame = +1

Query: 118 MKQNIPSL*PTRF--IIDYKNINIPD*H*CNMASEDVIELGSSDDDTEPAPKKAKTRPNA 291
           MK   PS  PT+   +ID  N+ +   H  N  S +   + S+++     PK    +P  
Sbjct: 367 MKSIPPSKRPTKSTSLIDVTNVKVQRTHLANDISSEKQSIKSANEKAYVTPKSNSLKPG- 425

Query: 292 MVHIPNNLCGITIKPAKPSNSAL--PLSLVGRSITVTK-IPKDVN-PVSMKLKNNGCAIQ 459
                 +L  I+    K  N     P + V +   + K   K+++  V  +  N      
Sbjct: 426 ---FGKSLSDISNSATKNENVPFLPPRTGVSKYFKLQKNTEKEIDEQVPSQSNNTTPTSA 482

Query: 460 KNNSVSPRPVVRQYIRQSPKS 522
           K++S SP+     +  Q+P S
Sbjct: 483 KSDSASPQNWFSSFSYQTPNS 503


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 382 SITVTKIPKDVNPVSMKLKNNGCAIQKNNSVSPRPVVRQYIRQSPK 519
           S+ V +IP+D  P S    ++  A+    ++SP  +  QY+ ++PK
Sbjct: 72  SVKVQEIPQDQLPKS----SSDNAVTDRKTISPSGINNQYVIRNPK 113


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 443 LFFNFIETGLTSLGILVTVIDLPTNDSGRALLDGFAGF 330
           +  NF++T   +  IL  ++DL +ND  +  +D   GF
Sbjct: 218 MLVNFLQT--RNPPILPAMLDLMSNDDNKMFVDDIVGF 253


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 143 YKLGIFCFITLAKYVHFFIKQEGKLYQQI 57
           + LGI  F  LA Y  F+ +   KLY+ I
Sbjct: 381 WSLGILIFEMLAGYPPFYSENPMKLYENI 409


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 122 FITLAKYVHFFIKQEGKLYQQI 57
           F  LA + ++F+   G+LYQ++
Sbjct: 474 FANLAHFTNYFVPLSGQLYQKV 495


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/61 (21%), Positives = 29/61 (47%)
 Frame = -1

Query: 602 LYCCGTFPILALFMLTKLTGIRHPVILLFGDCLIYCLTTGLGETELFF*IAHPLFFNFIE 423
           + C  TF  L+   L ++  + +P+     + ++ C  TG G+T++          N++E
Sbjct: 266 ILCRKTF--LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVE 323

Query: 422 T 420
           +
Sbjct: 324 S 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,309
Number of Sequences: 5004
Number of extensions: 56955
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)