Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_G13
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF022984-1|AAB69953.1| 540|Caenorhabditis elegans Hypothetical ... 29 2.2
Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical pr... 28 5.0
U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine rece... 28 5.0
U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membr... 28 5.0
U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein. 28 5.0
U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein... 28 5.0
AF067219-7|AAC17026.2| 372|Caenorhabditis elegans Innexin prote... 28 5.0
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 28 5.0
Z78059-6|CAH04727.1| 362|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z78014-4|CAH04707.1| 362|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine re... 27 8.8
>U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical
protein F56A3.2 protein.
Length = 443
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/100 (26%), Positives = 43/100 (43%)
Frame = +1
Query: 214 EDVIELGSSDDDTEPAPKKAKTRPNAMVHIPNNLCGITIKPAKPSNSALPLSLVGRSITV 393
E I SDDD+ P P K +T + IP + G K + S + + T
Sbjct: 2 ETFILSSDSDDDSGPPPSKRRT----IEGIPRSFSG-----DKKIRFSFGASNMSQDTTQ 52
Query: 394 TKIPKDVNPVSMKLKNNGCAIQKNNSVSPRPVVRQYIRQS 513
IP+D + V + + + K +S +P+ V R+ + S
Sbjct: 53 EIIPEDTDTVPLTIPSTPALSGKFDSKTPKSVRRRSVSMS 92
>AF022984-1|AAB69953.1| 540|Caenorhabditis elegans Hypothetical
protein ZK488.6 protein.
Length = 540
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +1
Query: 205 MASEDVIELGSSDDDTE-PAPKKAKTRPNAMVHIPNNLCG-ITIKPAKPSNSALPLSLVG 378
M E ++ SS ++E +P K ++ ++ N+ I K S ++ +
Sbjct: 1 MEREALLHTSSSPKNSELSSPTKRPSKSLLIIFALTNVAFLICFSKIKFSTGGTEVTKIA 60
Query: 379 RSITVTKIPKDVNPVSMKLKNNGCAIQKNNSVSPR 483
R + K+P +++ S L + I N+ +PR
Sbjct: 61 RPEVIVKVPTEISTTSTALSSTSQFISSTNAPAPR 95
>Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical
protein F13G3.8 protein.
Length = 423
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 351 IRRLCGFYSYSTKIIWYVNHGIRSSFCFLWRWFSIII*RT*FYHIFACH 205
+R L YS + + +N F FL+ WF ++ T F IF C+
Sbjct: 253 VRVLGNLQRYSIQCVLTLNMFNEKIFLFLYIWFLLVFFVTLFDSIFLCY 301
>U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine
receptor, class w protein117 protein.
Length = 372
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 204 VASMLIGNVNIFVIDYKPCRLQTWNILL 121
V+S+LI V++F++ KP R + NIL+
Sbjct: 47 VSSILINIVHVFILTRKPMRTSSINILM 74
>U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membrane
protein protein.
Length = 420
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/38 (21%), Positives = 20/38 (52%)
Frame = -3
Query: 354 TIRRLCGFYSYSTKIIWYVNHGIRSSFCFLWRWFSIII 241
++R+L + Y+ + + +N + F+W WF ++
Sbjct: 253 SVRKLANVHRYTVQCVLMINMFNEKIYLFIWFWFVFVL 290
>U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein.
Length = 423
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 351 IRRLCGFYSYSTKIIWYVNHGIRSSFCFLWRWFSIII*RT*FYHIFACH 205
+R L YS + + +N F FL+ WF ++ T F IF C+
Sbjct: 253 VRVLGNLQRYSIQCVLTLNMFNEKIFLFLYIWFLLVFFVTLFDSIFLCY 301
>U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein 3
protein.
Length = 420
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/38 (21%), Positives = 20/38 (52%)
Frame = -3
Query: 354 TIRRLCGFYSYSTKIIWYVNHGIRSSFCFLWRWFSIII 241
++R+L + Y+ + + +N + F+W WF ++
Sbjct: 253 SVRKLANVHRYTVQCVLMINMFNEKIYLFIWFWFVFVL 290
>AF067219-7|AAC17026.2| 372|Caenorhabditis elegans Innexin protein
16 protein.
Length = 372
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 351 IRRLCGFYSYSTKIIWYVNHGIRSSFCFLWRWFSIII 241
+R L + +S + + VN F FLW WF+ ++
Sbjct: 239 VRELGNIHHWSLQCVLMVNMFNEKIFIFLWFWFAFLL 275
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +1
Query: 250 TEPAPKKAKTRPNAMVHIPNNLCGITIKPAKPSNSALPLSLVGRSITVTKIPK 408
T PKKAKT + PN + P+ S + VGR + KIPK
Sbjct: 796 TATPPKKAKTSNSVP---PNKMVSAASTPSSSSTPGPASTSVGRFTNLKKIPK 845
>Z78059-6|CAH04727.1| 362|Caenorhabditis elegans Hypothetical
protein C34B4.3 protein.
Length = 362
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 268 SLALVQYHHLKNLILSHLRLPCCINV 191
++ LV H ++N I + L +PC INV
Sbjct: 222 TMLLVHQHSVQNTIETRLLMPCLINV 247
>Z78014-4|CAH04707.1| 362|Caenorhabditis elegans Hypothetical
protein C34B4.3 protein.
Length = 362
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 268 SLALVQYHHLKNLILSHLRLPCCINV 191
++ LV H ++N I + L +PC INV
Sbjct: 222 TMLLVHQHSVQNTIETRLLMPCLINV 247
>AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine
receptor, class w protein144 protein.
Length = 357
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 228 FYHIFACHVASMLIGNVNIFVIDYKPCRLQTWNILLHYSS--EIRSFFHK 85
FY+ VAS+ I + ++ +KP R + NI++ + + +I S F+K
Sbjct: 37 FYYEHYLSVASIFINIFHFLILIHKPLRSSSINIIMAFIAIFDICSMFYK 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,762,489
Number of Sequences: 27780
Number of extensions: 312381
Number of successful extensions: 915
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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