Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_G13
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   4.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   6.0  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   6.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 250 TEPAPKKAKTRPNAMVHIPNNLCGITI 330
           T+P   + KT+P +  H+ ++   IT+
Sbjct: 248 TKPPKPQTKTKPTSPYHVSDHKAAITV 274


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 295 VHIPNNLCGITIKP 336
           VHI +++CGI  KP
Sbjct: 276 VHIIDSICGIDSKP 289


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 114 SNEAKYSKFVTYKVYNRLQKY 176
           SN  KYS +  Y  YN+   Y
Sbjct: 86  SNNYKYSNYNNYNNYNKKLYY 106


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 364 LSLVGRSITVTKIPKDVNPVSMKLKNNGCAIQKNNS 471
           +  +G  I   K+   V+PV    +NNG    K  S
Sbjct: 21  MKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTS 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,576
Number of Sequences: 438
Number of extensions: 4093
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)