Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_G10
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    80   2e-17
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    80   2e-17
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    28   0.091
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.12 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   1.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 80.2 bits (189), Expect = 2e-17
 Identities = 33/72 (45%), Positives = 53/72 (73%)
 Frame = +2

Query: 440 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 619
           +K H+N+V IGHVD+GKST  G ++   G +DKRT+EK+E+EA+E  + S+  +W LD  
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63

Query: 620 QEERDKGKTVEV 655
           + ER++G T+++
Sbjct: 64  KAERERGITIDI 75


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 80.2 bits (189), Expect = 2e-17
 Identities = 33/72 (45%), Positives = 53/72 (73%)
 Frame = +2

Query: 440 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 619
           +K H+N+V IGHVD+GKST  G ++   G +DKRT+EK+E+EA+E  + S+  +W LD  
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63

Query: 620 QEERDKGKTVEV 655
           + ER++G T+++
Sbjct: 64  KAERERGITIDI 75


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 410 KPPRVEDTRSKKEHVNVVFIGHVDAGKSTI 499
           K P   +++  K H  V  +GHVD GK+T+
Sbjct: 132 KRPLPNESQLIKRHPIVTIMGHVDHGKTTL 161


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 437 SKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 553
           S++  +N+  IGHV  GKSTI   I  +  +  K  LE+
Sbjct: 38  SRQATINIGTIGHVAHGKSTIVKAISGVQTVRFKNELER 76


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 330 LKKTMNRKKKNWIHKRMVN*QKRFQRK 410
           +K    R++K+ +HK  ++ ++RF R+
Sbjct: 97  IKSLEERERKHAVHKEQLSREQRFLRR 123


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 602 WALDTNQEERDKGKTVEV 655
           W LD  + ER++G T+++
Sbjct: 1   WVLDKLKAERERGITIDI 18


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 318 HYSHLKKTMNRKKKNWIHK 374
           HY   K+  + +  NW HK
Sbjct: 175 HYDRYKEEESNENYNWEHK 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,378
Number of Sequences: 438
Number of extensions: 2708
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)