Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_G09
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0213 + 20974712-20975413 31 0.61
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 31 0.61
01_01_0374 - 2919425-2919529,2919645-2920319 29 0.66
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 30 1.1
03_05_0437 - 24293236-24294120 30 1.4
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218... 30 1.4
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 29 1.8
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 29 3.2
08_02_0299 + 15487202-15487227,15487369-15487491,15488277-154883... 28 5.6
09_02_0237 + 6141048-6141962 27 7.5
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 27 7.5
12_01_0933 - 9263023-9263146,9263224-9263416,9263495-9263634,926... 27 9.9
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 27 9.9
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199... 27 9.9
04_03_1012 - 21711945-21714002 27 9.9
02_05_0239 + 27101440-27101904 27 9.9
>02_04_0213 + 20974712-20975413
Length = 233
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 386 FPISSTFLLPRLDQASSGGQSVVATGTIEAA 294
+P SST D A+SGGQ+V AT + AA
Sbjct: 40 WPFSSTMATADDDDAASGGQAVAATAPVAAA 70
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 31.1 bits (67), Expect = 0.61
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 321 GSNWDNRSSCCNGSSLIWLLMMAYSRGS-SDNNVSRPHDKYKNRNVFSNNADRSIN 157
G+N + SS NGS+ W Y G SDNN + + + +SNNA S N
Sbjct: 735 GNNNNAWSSNNNGSNNAWSSTRDYDNGGRSDNNPYYNSSTWSSNSTYSNNAAWSSN 790
>01_01_0374 - 2919425-2919529,2919645-2920319
Length = 259
Score = 28.7 bits (61), Expect(2) = 0.66
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 306 CPSCYHTLSTRASLVQPRQQEGAG 377
CP C ++T SLV+P GAG
Sbjct: 132 CPVCKRKMATEVSLVEPDDVSGAG 155
Score = 21.0 bits (42), Expect(2) = 0.66
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = +3
Query: 156 SLYFCRHCLKIRCGFCICHEVDSHYCPNCLENM 254
+LY C C R + +V+ CP C M
Sbjct: 107 ALYRCSGCACSRSCYNFVTKVNGTPCPVCKRKM 139
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1
Query: 398 FVFYFPISSTFLLPRLDQASSGGQSVVATGTIEAAAATVLL 276
F F+ P +T+ + R D+A GG +VA+G AA VLL
Sbjct: 14 FAFFPPEPATYAV-RKDEACGGGGRLVASGVPRDAAVDVLL 53
>03_05_0437 - 24293236-24294120
Length = 294
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 379 SPAPSCCRGWTRLALVDKVW*QLGQSKQLLQRF 281
S AP CRGW R A +W L + L RF
Sbjct: 36 SAAPLVCRGWRRAAADPSLWRALDLRRDHLARF 68
>03_05_0415 -
24019330-24019539,24020948-24021099,24021765-24021846,
24021930-24022068,24022775-24023127
Length = 311
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 277 RRTVAAAASIVPVATTLCPPELAWSNLGSKKVLEMGK*KTNIKKRCTI*LVSIVDGHLEM 456
R AAAAS TT P E+ WS V +G T ++ R S+ G L +
Sbjct: 50 REAAAAAASTSSTTTTPRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAI 109
Query: 457 WE 462
W+
Sbjct: 110 WK 111
>12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 216 VDSHYCPNCLENMPSSEARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEG 371
VD + CPNC ++ + + + + F C SC H L + ++EG
Sbjct: 856 VDKYTCPNCGKSFSAFDVKDLVSCTDGNFYCESCKHELVACSEYGNYNEREG 907
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = +3
Query: 216 VDSHYCPNCLENMPSSEARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVEN 395
+ ++ CPNC S A + + F C C LS + + G GD +
Sbjct: 159 IQNYVCPNCERRYSSLNALDLVSHIDNNFHCKHCNEELSQDFGDLAWGGRGGDGDNARRD 218
Query: 396 KHQKKMYYL 422
+H K +L
Sbjct: 219 RHAKLKDFL 227
>08_02_0299 +
15487202-15487227,15487369-15487491,15488277-15488397,
15488572-15488700,15489954-15490063,15490139-15490322,
15491155-15491346,15492190-15492411,15492501-15492687,
15494009-15494103
Length = 462
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 225 HY-CPNCLENMPSSEARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKH 401
HY CPNC + + +A + F C +C L + + ++ G GD +
Sbjct: 161 HYICPNCKKRYSAFDALQLISYTDEYFHCENCNGELVAESDKL-ASEEMGDGDDNARKRR 219
Query: 402 QKKM 413
++K+
Sbjct: 220 REKL 223
>09_02_0237 + 6141048-6141962
Length = 304
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 228 YCPNCLENMPSSEARLKKNRCSSCFDCPSC 317
+C C++++P+S+A + C+ F C +C
Sbjct: 125 FCKICMDDVPASDAHRGSHGCAHAF-CAAC 153
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 324 CG-SNWDNRSSCCNGSSLIWLLMMAYSRGSSDNNVSR 217
CG S D+ +SCCNG + LM +R S D R
Sbjct: 261 CGDSEVDDTASCCNGGAANLQLMPKENRHSKDLTACR 297
>12_01_0933 -
9263023-9263146,9263224-9263416,9263495-9263634,
9263760-9263881,9263970-9264039,9264463-9264498,
9264567-9264692,9265294-9265424,9265549-9265645,
9265858-9266027,9267817-9267874,9268758-9269074
Length = 527
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 228 YCPNCLENMPSSEARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENK 398
Y PN + ARL CSS CPS H L + Q +E + ++NK
Sbjct: 326 YTPNDYPSEAEWRARLLIE-CSSAIKCPSIAHHLVGTKKIQQELAKENVLERFLDNK 381
>08_01_0509 +
4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 167 LSALFENTLRFLYLS*GRLTLLSELPREYAIIR 265
+SAL + L LYL+ G LTL S P IIR
Sbjct: 660 VSALLSSNLHHLYLTGGPLTLESWYPPTPCIIR 692
>05_07_0267 + 28818396-28818513,28819292-28819697,28819796-28819973,
28820414-28820553,28820629-28821874,28821952-28822052,
28822170-28822314,28822755-28822823,28822910-28822955,
28823049-28823422,28823622-28823701,28823813-28823948,
28824199-28824358,28824582-28824664,28825417-28825545
Length = 1136
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 372 AGDGKVENKHQKKMYYLACXNCRWT-SRDVGIPDQPVASGGWPERPNPFATPNQSTP 539
+G +N+H + + N + T S + P Q + S G+ PN + PN S P
Sbjct: 897 SGSDPEQNEHS---FIINSGNSKKTLSSETDYPPQSLESDGYSVAPNDWMAPNLSVP 950
>04_03_1012 - 21711945-21714002
Length = 685
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 303 RSSCCNGSSLIWLLMMAYSRGSSDNNVSRPHDKYKNRNVFSNNA 172
RS + L+ L+ AY+R S ++ R D +RN FS NA
Sbjct: 43 RSPFAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNA 86
>02_05_0239 + 27101440-27101904
Length = 154
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 213 EVDSHYCPNCLENMPSSEARLKKNRCSSCF--DCPSCYHTLSTR 338
E + CP CL+ M + A CS F DC + T+S R
Sbjct: 85 EEEEQLCPICLDGMEAGRAVRVLPGCSRAFHQDCVDRWLTISPR 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,666,708
Number of Sequences: 37544
Number of extensions: 342914
Number of successful extensions: 1145
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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