Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_G09
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41559-4|AAC24257.1| 413|Caenorhabditis elegans Hypothetical pr... 111 2e-25
Z81483-2|CAB03959.1| 154|Caenorhabditis elegans Hypothetical pr... 31 0.55
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 31 0.55
AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical ... 31 0.72
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 30 0.95
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 30 0.95
U41508-6|ABS19459.1| 323|Caenorhabditis elegans Hypothetical pr... 30 1.3
U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein. 30 1.3
AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical ... 29 1.7
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 29 2.2
Z77663-6|CAB01207.1| 360|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z82264-8|CAB05153.1| 706|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z81493-2|CAB04040.1| 133|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical p... 28 5.1
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 28 5.1
U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U41559-4|AAC24257.1| 413|Caenorhabditis elegans Hypothetical
protein C26B2.1 protein.
Length = 413
Score = 111 bits (268), Expect = 2e-25
Identities = 57/142 (40%), Positives = 76/142 (53%)
Frame = +3
Query: 87 MAYLTQPDYVRYICTCGQLKPITSLYFCRHCLKIRCGFCICHEVDSHYCPNCLENMPSSE 266
M+ L Q ++Y CTCG+ + + L FCR+C KI+C C EVD+ +CP CLE E
Sbjct: 1 MSELLQYSRIKYECTCGKFRTLPDLVFCRYCFKIKCDDCSLGEVDNIFCPRCLEPSSVPE 60
Query: 267 ARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLACXNCRWT 446
ARLKK++C+SC DCP C + LS R EN + YL C CRW+
Sbjct: 61 ARLKKHKCASCNDCPKCANVLSAR----------------TENDN----VYLVCQYCRWS 100
Query: 447 SRDVGIPDQPVASGGWPERPNP 512
SR+ DQ + WP + NP
Sbjct: 101 SREANQEDQE-NTKSWPTKENP 121
>Z81483-2|CAB03959.1| 154|Caenorhabditis elegans Hypothetical
protein C43D7.4 protein.
Length = 154
Score = 31.1 bits (67), Expect = 0.55
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = -3
Query: 258 MAYSRGSSDNNVSRPHDKYKNRNVFSNNADR-----SIN**LVSVDRKYKCISHNQVELN 94
M Y + D N+ D NRN S++ DR + N L SV+RK C + ++N
Sbjct: 1 MVYVHANVDTNIDNRKDNCDNRNTNSHSVDRKDNFGNTNTNLHSVNRKDNCDNREDGDMN 60
Query: 93 M 91
+
Sbjct: 61 L 61
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 168 CRHCLKIRCGFCICHEVDSHYCPNCLENMPSSEARLKKNRCSSCFDC 308
C +C GFC C E HY C+ + +++ L N+C S C
Sbjct: 1129 CTNCSVCVNGFCRCPEGLVHYGDKCVSEIDATKC-LASNQCPSGAQC 1174
>AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical
protein F33E11.6b protein.
Length = 447
Score = 30.7 bits (66), Expect = 0.72
Identities = 20/57 (35%), Positives = 21/57 (36%)
Frame = +3
Query: 147 PITSLYFCRHCLKIRCGFCICHEVDSHYCPNCLENMPSSEARLKKNRCSSCFDCPSC 317
PI C C K C Y P C+E MP A L K SC DC C
Sbjct: 328 PIDPSRPCDSCEKTGGEMICCATCKIAYHPQCIE-MPERMAALVKTYEWSCVDCRLC 383
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 30.3 bits (65), Expect = 0.95
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 11/157 (7%)
Frame = +3
Query: 36 IFLVSSLLFKNYLFTVKMAYLTQPDYVRYICTCGQLKPITSLYFCRHCLKIRCGFCICHE 215
+++ S+L +Y FT +PD V ICT C+H +I+ F + +
Sbjct: 68 VYISSALRLADYAFTPDDNIRIKPDAVIVICT-----------QCQH--QIQDKFFLSID 114
Query: 216 VDSHYCPNCLENMPSSEARLKKNRC---SSCFDCPSCY---HTLSTRASLVQPRQQEGAG 377
+Y NCL+ + E L N+C F C CY H ST +S + + +
Sbjct: 115 -GRNYHENCLQ-CSTCENPL-SNKCFYKDKTFYCKGCYFRTHVTSTASSCRELGPKCASC 171
Query: 378 DGKVE-----NKHQKKMYYLACXNCRWTSRDVGIPDQ 473
D ++ + + +Y+LAC +C R + ++
Sbjct: 172 DRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEE 208
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 30.3 bits (65), Expect = 0.95
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 11/157 (7%)
Frame = +3
Query: 36 IFLVSSLLFKNYLFTVKMAYLTQPDYVRYICTCGQLKPITSLYFCRHCLKIRCGFCICHE 215
+++ S+L +Y FT +PD V ICT C+H +I+ F + +
Sbjct: 68 VYISSALRLADYAFTPDDNIRIKPDAVIVICT-----------QCQH--QIQDKFFLSID 114
Query: 216 VDSHYCPNCLENMPSSEARLKKNRC---SSCFDCPSCY---HTLSTRASLVQPRQQEGAG 377
+Y NCL+ + E L N+C F C CY H ST +S + + +
Sbjct: 115 -GRNYHENCLQ-CSTCENPL-SNKCFYKDKTFYCKGCYFRTHVTSTASSCRELGPKCASC 171
Query: 378 DGKVE-----NKHQKKMYYLACXNCRWTSRDVGIPDQ 473
D ++ + + +Y+LAC +C R + ++
Sbjct: 172 DRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEE 208
>U41508-6|ABS19459.1| 323|Caenorhabditis elegans Hypothetical
protein W01C8.5b protein.
Length = 323
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 465 PDQPVASGGWPERPNPFA-TPNQSTP 539
PD + GWPE + FA TPN++TP
Sbjct: 225 PDTYLECDGWPEDVHSFAFTPNETTP 250
>U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical
protein W01C8.5a protein.
Length = 511
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 465 PDQPVASGGWPERPNPFA-TPNQSTP 539
PD + GWPE + FA TPN++TP
Sbjct: 413 PDTYLECDGWPEDVHSFAFTPNETTP 438
>AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein.
Length = 511
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 465 PDQPVASGGWPERPNPFA-TPNQSTP 539
PD + GWPE + FA TPN++TP
Sbjct: 413 PDTYLECDGWPEDVHSFAFTPNETTP 438
>AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical
protein Y73C8C.7 protein.
Length = 574
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 210 HEVDSHYCPNCLENMPSSEARLKKNRCSSCFDCPSCYHT 326
+E+D + C CLE+M LK C DC YHT
Sbjct: 512 NELDDNECLVCLEDMKEEHETLK------CLDCKRKYHT 544
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 187 IFKQCRQKYKLVIG 146
+F++CR KYKLVIG
Sbjct: 72 VFRECRSKYKLVIG 85
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 187 IFKQCRQKYKLVIG 146
+F++CR KYKLVIG
Sbjct: 243 VFRECRSKYKLVIG 256
>Z77663-6|CAB01207.1| 360|Caenorhabditis elegans Hypothetical
protein F53F4.7 protein.
Length = 360
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 48 SSLLFKNYLFTVKMAYLTQPDYVRYICTCG 137
S L +++LF K Y+T PD V+ C G
Sbjct: 212 SQSLVESWLFWQKSVYITDPDLVKMFCLRG 241
>Z82264-8|CAB05153.1| 706|Caenorhabditis elegans Hypothetical
protein C49C3.1 protein.
Length = 706
Score = 28.3 bits (60), Expect = 3.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3
Query: 333 WTKCGSNWDNRSSC 292
W +CG++W+N SC
Sbjct: 163 WNRCGNSWNNAESC 176
>Z81493-2|CAB04040.1| 133|Caenorhabditis elegans Hypothetical
protein F01D5.2 protein.
Length = 133
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 147 PITSLYFCRHCLKIRCGFCICHE--VDSHYCPNCLENMPSSEARLKKNRCSSCF-DC 308
P+ + + ++C K CG C V PNC++ ++ K+ C+SCF DC
Sbjct: 43 PMYTSFLDKYCPKT-CGLCPDSTTLVPPTANPNCVDTNVHCKSWAKQGYCTSCFLDC 98
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +3
Query: 273 LKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLACXNCRWTSR 452
+++ +CS+ C + S+ QP Q+ D V N HQ ++ L C++T
Sbjct: 88 MQRCKCSNEPQSSGCSCANKAQTSVCQPSCQKSCVDSCVRNSHQPQL--LCDKTCQFTCN 145
Query: 453 DVGIPDQPVAS 485
P +S
Sbjct: 146 KACTPSTSTSS 156
>Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical
protein Y57G11C.51 protein.
Length = 160
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 438 RWTSRDVGIPDQPVASGGWPERPNPFATPNQST 536
R RD G+ P S W +P+P +TP+ ST
Sbjct: 100 RRAGRDAGLSANPKRSPRWSPQPDP-STPSSST 131
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 165 FCRHCLKIRCGFCICHEVDSHYCPNCLENMPSSEARLKKNRCSS 296
+C H KI+CG C H+ C + E R+ K+R SS
Sbjct: 726 WCEHMKKIKCGHCEATGEQGHHPLICPKK--KEEERVAKSRESS 767
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 165 FCRHCLKIRCGFCICHEVDSHYCPNCLENMPSSEARLKKNRCSS 296
+C H KI+CG C H+ C + E R+ K+R SS
Sbjct: 723 WCEHMKKIKCGHCEATGEQGHHPLICPKK--KEEERVAKSRESS 764
>U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical
protein C56G2.4 protein.
Length = 538
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 291 SSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMY 416
SSC+D P YH L AS Q R E G +KH+ +Y
Sbjct: 461 SSCYDLPYAYHILMKDAS--QNRTMERRG-----SKHRSSLY 495
>Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical
protein F01D5.1 protein.
Length = 178
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 234 PNCLENMPSSEARLKKNRCSSCF 302
PNC +N P+ +K C+ CF
Sbjct: 116 PNCQDNGPNCAGWVKNGYCNKCF 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,394,858
Number of Sequences: 27780
Number of extensions: 300456
Number of successful extensions: 976
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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