Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_F22
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522...    30   1.9  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   7.5  
05_03_0373 - 13194723-13195847,13196219-13196809                       28   7.5  
04_04_0849 - 28689098-28689188,28689373-28689503,28689850-286899...    27   9.9  
01_06_1545 + 38144624-38145301                                         27   9.9  

>12_02_1123 -
           26250300-26250362,26251988-26252042,26252128-26252224,
           26252364-26253048,26253354-26253721,26253931-26254074,
           26254925-26255276
          Length = 587

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 176 FKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 337
           F LDL   S  + G++F SG+ S   +  V   L+ + A+KDY    T+  N D T
Sbjct: 277 FHLDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFREAIKDYSTPSTKTLNRDLT 332


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 450 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 322
           ++V +  VL +  C   + SR+ L PA+ LSW   S    LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 398 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 496
           GT+  Q  T TGK+  +FT +    +  LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569


>04_04_0849 -
           28689098-28689188,28689373-28689503,28689850-28689956,
           28692318-28692396,28692583-28692678,28692777-28693049,
           28693139-28693285,28693381-28693723,28693784-28693995
          Length = 492

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 600 CSWRTLLFVYQTGCVHQPANPW*FSTAATSTTGPAKSRSKLVFTATVSLVNEVFNFPVLV 421
           C+W TL  V     + +  +   F  AA+   G   SRSK++  +    V  + +FP+ +
Sbjct: 169 CTWSTLPAVE----LKEAVSTMVFDLAASKLLGLEPSRSKILRKSFFDFVRGLISFPLYL 224

Query: 420 P 418
           P
Sbjct: 225 P 225


>01_06_1545 + 38144624-38145301
          Length = 225

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
 Frame = -3

Query: 528 STAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRVTLRPA 373
           +TAA+S++ P  SRSK+   +   TVS      E  N    V+VP   A  P+RV +  A
Sbjct: 34  ATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARVVVSDA 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,949
Number of Sequences: 37544
Number of extensions: 353007
Number of successful extensions: 947
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)