Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_F17
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    31   0.15 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.0  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    28   1.4  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   4.1  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   4.1  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   5.5  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   7.2  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   7.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.5  
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   9.5  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 165 NMSVEASDSGKSDRKLYNSVISADYDDATKRCEQLQSEPNGSYIIKNTVTELLNNAESNT 344
           +++V A DS  S         + D+D   K  +  + EP G   + N    L  NA+ +T
Sbjct: 279 SVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDDT 338

Query: 345 INFSYKLWT 371
                K +T
Sbjct: 339 RRAMMKSYT 347


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 477 MTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK 629
           M LS D D  GD +A+G   +H   W+ +S++ S +   + ++P   ++LK
Sbjct: 258 MCLSGDFDHYGDVEAFG---NHPPWWRQLSNFASVQDRLRDWDPIVAKKLK 305


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 408 LEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGD 512
           LE+ L+L  +   K+IN HD ++ TL   L    D
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSD 491


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 261 EQLQSEPNGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILDDKK 440
           EQL++  N +   K  +  LLN     T NF  KL +   Q I  +  P+E  L  D   
Sbjct: 61  EQLETVQNENEENKTKLAALLNRFHEETDNFLSKL-SLCQQEIQDTFKPVEANLAYDVDT 119

Query: 441 DCKIINK 461
           D + +++
Sbjct: 120 DSEDLDE 126


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 453 INKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQ 620
           I++ DD Y  +   L++  D DAY   +   ++ +F+S  ESN      F   YN+
Sbjct: 54  IHEQDDSYSDI---LEEEPDEDAYDSPERPSSTEEFISQDESNISAGSSFMFPYNR 106


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 214 TIQSFPLTTMMQPKDASNFNPNRMVR 291
           T++  PL+ M + KD+S F  NR+++
Sbjct: 209 TVEPTPLSFMSEMKDSSQFYANRVMK 234


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 411 EFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 551
           E   + D++ D + +   D+  +  S D+ ++GD     DEDD K+S
Sbjct: 345 EAEWVADEEDDGEDLESEDE-EVDNSDDIVEDGDNAFVDDEDDDKDS 390


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 492 DLDQNGDRDAYGDEDDHKNSWKFMSSWESN 581
           D+ +  D DAYG+E+     W    S +SN
Sbjct: 254 DISEILDLDAYGNENTSNLEWSIQRSNDSN 283


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 388 IFWCPVVHSL*EKLIVLDSALLSSSVTVFFMMYEPFGSD*SCSHL 254
           IFW  +     +K I +D+ +L+   T     +EP G+     HL
Sbjct: 324 IFWTEIYDQSEKKWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHL 368


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 252 KRCEQLQSEPNGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILD 431
           K  E+L +      ++ N+V   LN+      NF Y +W+    N  QS   L + L  D
Sbjct: 803 KMNEELSTTDEAVKLLANSV---LNDVHPRVPNFRYFIWSVPMNNWFQSLVWL-YTLSFD 858

Query: 432 DK 437
           +K
Sbjct: 859 EK 860


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 492 DLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK 629
           D DQ GD +A+G   D +     +S + S +   + + P  +++LK
Sbjct: 247 DFDQYGDTEAFGTHPDWERQ---LSKFASVQDRLREWRPSVSEKLK 289


>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 159 FFNMSVEASDSGKSDRKLYNSVISA 233
           F+ +  +AS+  +  RKLYNS ++A
Sbjct: 5   FYEVKADASNQMEQVRKLYNSFMAA 29


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 225 ISADYDDATKRCEQLQSEPNGSYIIKNTVT-ELLNNAESNTINFSYKLWTT 374
           +  D  DA K C + Q     + ++K  VT E L    S+ IN   K+ TT
Sbjct: 468 VEKDDRDAIKECVETQLNKQINLLVKKRVTEENLEQEISSIINDLPKISTT 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,049
Number of Sequences: 5004
Number of extensions: 53919
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)