Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_F14
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    28   0.77 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.8  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   2.3  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   5.4  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   5.4  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    25   7.2  

>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 263 DKKQKSQNEELKKRIQTWD 207
           D+KQK Q E L+  I+ WD
Sbjct: 69  DEKQKQQRERLRSMIKVWD 87


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 209 PKFVFFFSILHFEIFVFY--HNVNCSFCKTD*NVCACF-KNCVVLKFEAFDVL 358
           P   F+F IL   I   Y     N +F  T   + + F K+CV LKF  FD++
Sbjct: 615 PYSQFYFCILSSAIIKMYLDFEFNENFNATTFGLLSSFTKHCVWLKFRNFDLV 667


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 3   LLGNTFN*YFLSLNRRLFKIALYFSFFIIFAHLC 104
           +L N+FN   +   +   K+  YFS FI F H+C
Sbjct: 501 ILLNSFNQKLMEYFKGFVKLD-YFSIFITFLHVC 533


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 188 FNITILNPKFVFFFSILHFEIFVFYHNVNCSF 283
           F  +  N  F F F +L+F +F   H  +C+F
Sbjct: 68  FKNSFSNLHFFFLFWLLNFILFFRIHLYSCNF 99


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 308 HIHFSLFYKSYNLH 267
           H HF++F  S+N+H
Sbjct: 113 HFHFTVFINSFNIH 126


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 294 TEMYVPVSKTVLYLNLKHLMFCILGVS 374
           T++ +P+ +T+L+  L+ L  CI  +S
Sbjct: 484 TDLILPMKQTILFWRLQPLEACIFFIS 510


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 13  TLLISIFCH*IGDYLKLHYILAFLLSSLT 99
           T+ +    + IG Y+ +H++L  LL  LT
Sbjct: 187 TISVPTKAYAIGSYIPIHFVLVPLLKRLT 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,095
Number of Sequences: 5004
Number of extensions: 30423
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)