Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_F14
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517...    31   0.43 
11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132...    27   9.3  
09_04_0527 - 18337968-18338077,18338440-18341212                       27   9.3  

>11_01_0643 -
           5174154-5174254,5174296-5174346,5174611-5174739,
           5174869-5175118,5175220-5177157
          Length = 822

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -1

Query: 387 CRSRQKHQVCKTSNASNLSTTQFLKQAHTFQSVLQKL 277
           CR R +   C+TS AS++ ++++L Q    +S L++L
Sbjct: 600 CRRRNRMFDCQTSTASSMKSSEYLNQQKFVRSKLEEL 636


>11_01_0161 -
           1327286-1328592,1328819-1329000,1329279-1329436,
           1329852-1329996,1330083-1330207
          Length = 638

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 296 SLFYKSYNLHYDKKQKSQNEELKKRIQTWDLKL*Y*NV 183
           S FY +Y L+Y+K ++ ++ E   R+ T    L + NV
Sbjct: 114 SAFYMAYALYYEKHKRFEDAENMYRLGTQKYHLPFINV 151


>09_04_0527 - 18337968-18338077,18338440-18341212
          Length = 960

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 422 IIVLFIIHKIAFAGVGRNTKYAK 354
           IIVLF+I KI  A  G   K AK
Sbjct: 4   IIVLFVIKKIGIAVAGETLKLAK 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,753,512
Number of Sequences: 37544
Number of extensions: 139174
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)