Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_F13
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos... 76 3e-15
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 29 0.40
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 0.93
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 26 2.8
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp... 25 3.8
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 3.8
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 25 3.8
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 3.8
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 3.8
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 25 5.0
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 6.6
>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 122
Score = 75.8 bits (178), Expect = 3e-15
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Frame = +1
Query: 76 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 255
S L + + Y T LK IDA+L ++ + +QFGY LVGT+PFNSFLSGFIS
Sbjct: 5 SGLFLPLSSVITSYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFIS 64
Query: 256 TVSCFVLGVCLRLQVNPE------NKNEFQGLSA-ERGFADFIFAHLVLH 384
V FV+ V R+ + + +K + +S +R F +F F+ LVLH
Sbjct: 65 CVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPYKRAFLEFCFSSLVLH 114
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 28.7 bits (61), Expect = 0.40
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Frame = -2
Query: 311 FSGLTCSRRHTPRTKQLTVDIKP-------LKKELNGKVPTRQ---Q*PNCMTAVRKI*K 162
F G+T RRH K DI P L KE+N Q + P+ ++R +
Sbjct: 36 FEGVTLQRRHVKGMKSYGSDITPRRPKQLGLPKEVNTSECIDQGSWRKPSAFESLRSYSR 95
Query: 161 RYASIILSFLGV 126
+++ I SF+GV
Sbjct: 96 KFSKRIFSFIGV 107
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.5 bits (58), Expect = 0.93
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 46 YYCKINKITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVG 216
Y C+ + I + L PK+ T L +D YL+YI ++ + Y +G
Sbjct: 541 YDCR-DYILGAGLCKAQPKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCLG 596
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +1
Query: 79 SLTAVIPK--LYQEYTTKTPKKLKIID 153
+LT PK LY Y++++PK KI+D
Sbjct: 145 NLTVASPKSNLYYRYSSESPKYAKILD 171
>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 88
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 68 SQCLHLLL*FQNCIKNTQRK 127
+QC +L+ +NC+K T RK
Sbjct: 51 AQCANLVAALENCMKTTHRK 70
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 219 FPI*FFLKWFYIYSKLL 269
FP FFL WFY++ +L
Sbjct: 293 FPFLFFLFWFYMHFNIL 309
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 283 CLRLQVNPENKNEFQGLSAERGFADF 360
C++ QV+P+ NEF +A++ F
Sbjct: 356 CVKFQVDPDKPNEFLAGTADKRILQF 381
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 58 INKITMSSLTAVIPKLYQE 114
INK+ S++ +IP+L+QE
Sbjct: 131 INKVNKSNIRDIIPELFQE 149
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 3.8
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 160 LFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSC----FVLGVCL 288
L +F+ ++ +G C + T PF F T S F+LG C+
Sbjct: 448 LLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCI 494
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 94 IPKLYQEYTTKT-PKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVS 264
IP + + T P+KLK+ + LF++ V+ G ++ T + + G + ++
Sbjct: 80 IPTFKETFAILTFPQKLKLTSSILFFLVAVGVLLSGDATILLTLSCSLIVEGVLIIIN 137
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +1
Query: 76 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGT 219
+SL + PK T L +D YL+Y+ ++ + Y +G+
Sbjct: 641 ASLCSHQPKFLLSLVYLTDLVLFFLDTYLWYMLISTMFSIAYSFYMGS 688
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,656
Number of Sequences: 5004
Number of extensions: 34803
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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