Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_F10
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.8  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   4.2  

>SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 86

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 478 LPNMWKKMRLMFKPPFYFIPFHENTSFVMIS 570
           +P +W+K +   KPPF   P HE +  ++IS
Sbjct: 32  IPVVWQKTK---KPPFVSFPRHEPSETIVIS 59


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  CHKHVAITYN*INIVINAPMSTCYCDLVVSNLDHGLVSG 180
           C  ++A++ + +  V++ P  +  CD ++ +    LVSG
Sbjct: 31  CRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLVSG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,437
Number of Sequences: 5004
Number of extensions: 45966
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)