Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_F09
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         48   9e-07
SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    48   1e-06
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   7.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.5  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   9.5  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   9.5  

>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
 Frame = +2

Query: 92  IPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLLIVARKL-- 265
           + +   Y  +   AF ++ P  P HVLVIP++ +P+L    D     L  L    RK+  
Sbjct: 12  VGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLK---DLTPSELTDLFTSVRKVQQ 68

Query: 266 AAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILGGRQMQWPPG*FIIYSNLRISSQKLA 442
             +     +   + + DG +  Q+V H+H+HI+  ++  +     ++YS L  +   LA
Sbjct: 69  VIEKVFSASASNIGIQDGVDAGQTVPHVHVHIIPRKKADFSEN-DLVYSELEKNEGNLA 126


>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 27/100 (27%), Positives = 54/100 (54%)
 Frame = +2

Query: 65  IFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHL 244
           IF KI++ +IP   + E    +AF D+ P +  H LVIP++   ++    +  ++    +
Sbjct: 4   IFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKEHAAKM---HELSDESCADI 60

Query: 245 LIVARKLAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHIL 364
           L + +K+   +G +   + ++ N+G+   Q V H+H HI+
Sbjct: 61  LPLVKKVTKAIGPE--NYNVLQNNGRIAHQFVDHVHFHII 98


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 209 ADDTDEQLLGHLLIVARKLAAQLGLDKTGFRLVVNDGKN 325
           ADD  +  + HL+I   KL   L   K+    +VN+ KN
Sbjct: 189 ADDLSKNGIKHLIIYKEKLRFSLESRKSRVDEIVNEMKN 227


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 95  GFLYVIFSQRLYHRLVRQFVRVSPHRPPCFF 3
           GFL  + S ++Y R    F+ + P    C +
Sbjct: 169 GFLQCVLSGKVYDRASYDFINLGPESTVCLY 199


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 445  LRN*QSLVEIAKQFNISKSVLHRHV 519
            LRN     E+   FNISKSV  ++V
Sbjct: 1314 LRNSSEKEEVCSVFNISKSVCSKYV 1338


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 30  NSHKLPHQAVIQSLGKYYVKKSLQ 101
           N H  PH  V+ +L   YV K LQ
Sbjct: 306 NKHTKPHLLVMDALSNLYVWKILQ 329


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 232 QLFISIISQRELWNRLPWYHQYMSRSLWVHIIERYALFV 116
           Q +I +++  +  N +P Y QY+S  +      R+ + V
Sbjct: 465 QAYIELLASAKKVNLVPLYIQYLSNQVQYEAYSRFLILV 503


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 251 VARKLAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHIL 364
           V  ++  Q  +DK   ++ V+       S YHLH+HIL
Sbjct: 215 VLTEVPKQFSVDKNQLKMFVHY----LPSYYHLHVHIL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,426
Number of Sequences: 5004
Number of extensions: 53798
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)