Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_F09
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 100 1e-21
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 95 4e-20
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 56 2e-08
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701 32 0.35
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364... 29 3.2
05_04_0384 - 20809397-20811547 28 5.6
02_05_0018 - 25011623-25013764 28 7.5
01_04_0122 - 16329370-16329478,16329636-16329639,16329872-163299... 28 7.5
06_01_0891 - 6819693-6819701,6820681-6820782,6821137-6821304,682... 27 9.9
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 27 9.9
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 100 bits (239), Expect = 1e-21
Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Frame = +2
Query: 35 AQTAAPGGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIP--RKPIPQLSL 208
A TA GG TIF KI+ KEIP+N +YEDE+ +AF D+NPQAP HVLVIP R + L
Sbjct: 36 AATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPKIRDGLTGLDK 95
Query: 209 ADDTDEQLLGHLLIVARKLAAQLGLDKTGFRLVVNDGKNGAQSVYHLHI 355
A+ ++LG+LL A+ +A + G+ + G+R+V+N NG + +Y LHI
Sbjct: 96 AEPRHVEILGYLLYAAKIVAEKEGIAE-GYRVVIN---NGPKGLYMLHI 140
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 95.1 bits (226), Expect = 4e-20
Identities = 42/94 (44%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
Frame = +2
Query: 56 GDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIP--RKPIPQLSLADDTDEQ 229
G +F KI++KEIP+ +++DE+ +AF D+NPQAPTH+++IP + + LS A++ +
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 251
Query: 230 LLGHLLIVARKLAAQLGLDKTGFRLVVNDGKNGA 331
+LG+LL VA+ +A Q GL+ G+R+V+NDG +G+
Sbjct: 252 ILGYLLYVAKVVAKQEGLE-DGYRIVINDGPSGS 284
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Frame = +2
Query: 53 GGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQL-SLADDTDEQ 229
G +F +I++ PA +YED+ C+ D P + H L+IP++ P L +
Sbjct: 70 GQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQATPPSVIAA 129
Query: 230 LLGHLLIVARKLAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILGGRQ 376
+ L +++ + D F ++VN+GK Q ++H H+H++ R+
Sbjct: 130 ICCKLPLISSAIVKATQCD--AFNVLVNNGKVAGQVIFHTHVHLIPRRK 176
>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
Length = 204
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -2
Query: 217 IISQRELWNRLPWYH----QYMSRSLWVHIIERYALFVFVNEICRDFFT*YFPKD 65
I+ REL+ LP YM R L +H + Y L + IC FF+ + PK+
Sbjct: 123 ILKVRELYGMLPVTAYLAVSYMDRFLSLHRLPAYTLIIECTNICMCFFSGFNPKE 177
>04_03_0594 -
17733827-17735085,17735576-17735642,17736379-17736413,
17736810-17737665
Length = 738
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 263 LAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILG 367
+A Q G TGF+L ND NG ++ ++ +LG
Sbjct: 27 IAGQPGCAMTGFKLSCNDTGNGVPTLLLRNVEVLG 61
>05_04_0384 - 20809397-20811547
Length = 716
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 281 GLAGQQVYGQQLEDVLTTVHQYHQPARAVE*ASL 180
G A +++ G L++V V +Y QP +E ASL
Sbjct: 29 GKAAEEMAGSHLDEVKRMVAEYRQPVVRIEGASL 62
>02_05_0018 - 25011623-25013764
Length = 713
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 281 GLAGQQVYGQQLEDVLTTVHQYHQPARAVE*ASL 180
G A +++ G L++V V +Y QP +E ASL
Sbjct: 29 GKAAEEMSGSHLDEVKRMVAEYRQPLVKIEGASL 62
>01_04_0122 -
16329370-16329478,16329636-16329639,16329872-16329965,
16330409-16330478,16330815-16330960
Length = 140
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 409 IDNKLARWPLHLPSSEDMNVKVVNALGAILSIVNNEAEACLV 284
++N+LA W +H+ + +N K A+G ++ +V A +V
Sbjct: 62 LENRLAIWHIHVTNLGSLNPKAFVAMGWLVLVVTWAAMGVMV 103
>06_01_0891 -
6819693-6819701,6820681-6820782,6821137-6821304,
6821546-6821629,6821927-6822105,6822418-6822544
Length = 222
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 302 GGSLSCPGLAGQQVYGQQLEDVLTTVHQYHQP 207
G SLSCP V GQ + + H +HQP
Sbjct: 176 GESLSCPVCLQDVVAGQTVRRLPKCSHTFHQP 207
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 536 FEIILITCLCKTDLLILNCLAISTKDC*FRRLLIFAMKFSNCY 408
F I+ + CL +L C+ ++ F+RL +F FS+ Y
Sbjct: 8 FIILSLNCLPSLGILFTPCIPVNDAKQVFKRLRLFVGDFSSKY 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,652,968
Number of Sequences: 37544
Number of extensions: 352305
Number of successful extensions: 815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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