Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_F06
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0478 + 18192636-18192784,18192991-18193052,18193381-181934... 157 5e-39
10_08_0482 + 18218163-18218362,18220388-18220446,18223027-182230... 155 3e-38
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 127 9e-30
07_03_0230 + 15526504-15526673,15526809-15526867,15527135-155271... 98 5e-21
01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926... 51 9e-07
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 32 0.46
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092... 31 1.1
02_05_0170 - 26431937-26434282 28 7.5
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 27 9.9
>10_08_0478 +
18192636-18192784,18192991-18193052,18193381-18193437,
18193771-18193805,18193940-18194043,18194238-18194313,
18194469-18194527,18194879-18194962,18195065-18195129,
18195241-18195323,18195670-18195760,18195847-18196157
Length = 391
Score = 157 bits (382), Expect = 5e-39
Identities = 74/142 (52%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Frame = +2
Query: 152 LNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLMVSEGYLDAGYEYLGI 331
L NGLA PPMGW +W F C + E +I+ TAD +VS G AGY+Y+ I
Sbjct: 39 LANGLATAPPMGWNSWNHFACDGN---------GEDVIRETADALVSTGLAAAGYKYVNI 89
Query: 332 DDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCAG-YPGVLG 508
DDCW E RD KG LV ++K FP+G+KA+ADY+HSKGLK G+Y D G TCA PG LG
Sbjct: 90 DDCWAEPQRDSKGNLVANKKTFPHGIKALADYVHSKGLKLGIYSDAGFKTCAKVQPGSLG 149
Query: 509 NEKIDINTFVEWEIDYLKLDGC 574
+E+ D TF W +DYLK D C
Sbjct: 150 HEEQDAKTFASWGVDYLKYDNC 171
>10_08_0482 +
18218163-18218362,18220388-18220446,18223027-18223083,
18223245-18223279,18223617-18223720,18223870-18223945,
18224045-18224103,18224183-18224248,18224338-18224421,
18224503-18224567,18224658-18224740,18224832-18224903,
18225166-18225306,18225395-18225456,18225539-18225605,
18225863-18226075
Length = 480
Score = 155 bits (376), Expect = 3e-38
Identities = 71/170 (41%), Positives = 101/170 (59%), Gaps = 1/170 (0%)
Frame = +2
Query: 149 ALNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLMVSEGYLDAGYEYLG 328
A NGL TP MGW +W F C I+E +I+ TAD +V+ G GY+Y+
Sbjct: 55 AFENGLGRTPQMGWNSWNHFYC----------GINEQIIRETADALVNTGLAKLGYQYVN 104
Query: 329 IDDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCAG-YPGVL 505
IDDCW E +RD +G VP+R+ FP+G+KA+ADY+H+KGLK G+Y D G+ TC+ PG L
Sbjct: 105 IDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSL 164
Query: 506 GNEKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILY 655
+E+ D+ TF W +DYLK D C + + Y + G++I +
Sbjct: 165 DHEEQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFF 214
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 127 bits (306), Expect = 9e-30
Identities = 71/168 (42%), Positives = 88/168 (52%)
Frame = +2
Query: 152 LNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLMVSEGYLDAGYEYLGI 331
LNNGLA+TP MGW +W F C I+E++I+ T
Sbjct: 54 LNNGLALTPQMGWNSWNFFACN----------INETVIRDT------------------- 84
Query: 332 DDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCAGYPGVLGN 511
DDCW R K +L+PD K FP+G+K +ADY+H KGLK G+Y D G TC PG L +
Sbjct: 85 DDCWSNVKRGKKDQLLPDPKTFPSGIKDLADYVHGKGLKLGIYSDAGIFTCQVRPGSLHH 144
Query: 512 EKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILY 655
EK D F W +DYLK D CY I+ YP LN+TGR I Y
Sbjct: 145 EKDDAAIFASWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQIFY 192
>07_03_0230 +
15526504-15526673,15526809-15526867,15527135-15527139,
15528165-15528268,15528362-15528437,15528646-15528704,
15528803-15528868,15529372-15529455,15529608-15529672,
15529758-15529840,15529949-15530039,15530142-15530194,
15530285-15530428,15530562-15530675
Length = 390
Score = 98.3 bits (234), Expect = 5e-21
Identities = 46/97 (47%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Frame = +2
Query: 368 GRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCA-GYPGVLGNEKIDINTFVEW 544
G + D K+FP+G+KA+ADY+HSKGLK G+Y G+ TC+ PG LG E ID TF W
Sbjct: 79 GYIAADPKKFPSGIKALADYVHSKGLKLGIYSSAGSRTCSKTMPGSLGYEDIDAKTFASW 138
Query: 545 EIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILY 655
+DYLK D C D +P L TGR I Y
Sbjct: 139 GVDYLKYDNCNSDGSSETVRFPKMSFALRKTGRPIFY 175
Score = 34.3 bits (75), Expect = 0.087
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 152 LNNGLAMTPPMGWLTWERFRC 214
L+NGL TP MGW +W F C
Sbjct: 46 LDNGLGRTPQMGWNSWNHFGC 66
>01_05_0126 -
18391879-18391937,18392021-18392102,18392508-18392667,
18392739-18392807,18392850-18392992,18393069-18393203,
18393283-18393341,18394090-18394187,18394347-18394510,
18394586-18394647,18394803-18394977,18396331-18396588,
18396694-18396841,18398458-18398813
Length = 655
Score = 50.8 bits (116), Expect = 9e-07
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Frame = +2
Query: 155 NNGLAMTPPMGWLTWERFRCITDCEKYPN--ECISESLIKRTADLMVSEGYLDAGYEYLG 328
N LA PP GW +++ F I D Y E ++E L+ + V + Y +
Sbjct: 125 NEQLAEFPPRGWNSYDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGA 184
Query: 329 IDDCWLEKTRDDKGRLVPDRKRFPN-----GMKAIADYIHSKGLKFGMY 460
D + D+ GR PD +RFP+ G +A+ +H GLKFG++
Sbjct: 185 YTDSYGFDNIDEWGRPFPDLQRFPSSRIDKGFSQLANKVHGMGLKFGIH 233
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +2
Query: 32 VVYKC*NKDKLKIKFTERVRSKIKMIRLI-----LVFLTISHSYALNNGLAMTPPMGWLT 196
V++ N+DK ++ F E VRS ++ + I LV + + + LA + P G L
Sbjct: 320 VIWILVNEDKCRVPFYELVRSNLQFLENIPDDEALVSIIMEIHRRRDMDLANSIPKGGLD 379
Query: 197 WER-FRCI 217
WER RC+
Sbjct: 380 WERALRCL 387
>03_06_0334 +
33208266-33208481,33208789-33208940,33209141-33209221,
33209371-33209491
Length = 189
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 116 ILVFLTISHSYALNNGLAMTPPMGWLTWE--RFRCITDCE 229
IL+ IS +LNN ++ +GW W+ R+RCI E
Sbjct: 146 ILLMDAISRMNSLNNAISRMNSLGWSLWDYSRWRCILALE 185
>02_05_0170 - 26431937-26434282
Length = 781
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +2
Query: 506 GNEKI--DINTFVE-WEIDYLKLDGCYIDPIQMDK 601
G EK+ D+N F + +EID ++++ Y+DP Q K
Sbjct: 551 GWEKLLDDVNQFCDLYEIDMMEMESTYVDPRQPRK 585
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 131 TISHSYALNNGLAMTPPMGWLTWERFRCITDCEKYPNE 244
TI+H+ ++G+AM +G L C+ +CEK PN+
Sbjct: 767 TIAHANVTSSGIAMGE-LGDLPSLTKLCVMNCEKGPNK 803
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,923,202
Number of Sequences: 37544
Number of extensions: 390450
Number of successful extensions: 889
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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