Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_F06
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical pr... 226 1e-59
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical ... 28 5.1
AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical... 28 5.1
AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8 prot... 28 5.1
U29377-9|AAA68718.3| 405|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z93379-8|CAC35812.2| 354|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z92786-7|CAB07209.1| 145|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF440508-1|AAL34096.1| 144|Caenorhabditis elegans SKR-5 protein. 27 8.9
>Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical
protein R07B7.11 protein.
Length = 451
Score = 226 bits (552), Expect = 1e-59
Identities = 100/183 (54%), Positives = 124/183 (67%)
Frame = +2
Query: 107 IRLILVFLTISHSYALNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLM 286
+RL+L L ++ L+NGL TPPMGW++W F C DC K+P CI+E L K AD +
Sbjct: 1 MRLLLPLLFCVGAFCLDNGLGRTPPMGWMSWTAFYCEIDCVKHPTGCINEQLYKDMADQL 60
Query: 287 VSEGYLDAGYEYLGIDDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYED 466
VS GY GY+ + IDDCW E RD G LV ++ RFP+GMKA+A Y+H +GLKFG+YED
Sbjct: 61 VSGGYDKVGYKSVHIDDCWSEMERDSHGILVANKTRFPSGMKALAKYMHDRGLKFGIYED 120
Query: 467 YGNLTCAGYPGVLGNEKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRS 646
YG TC GYPG +EK+D TF W++DYLKLDGC ID M GYP F K LN TGR
Sbjct: 121 YGTKTCGGYPGSYKHEKVDAQTFAAWDVDYLKLDGCNIDQAMMPIGYPLFEKELNETGRP 180
Query: 647 ILY 655
I+Y
Sbjct: 181 IMY 183
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
B0416.1 protein.
Length = 1203
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 347 EKTRDDKGRLVPDRKRFPNGMKAI 418
E T D+KGRL+PDR P+ + +
Sbjct: 1114 ETTDDEKGRLIPDRPPIPHSPREL 1137
>AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 424 LYPQQRFKVRHVRRLWKPHMCRLPRGAWKRKN 519
L P+ +KV + R P+ + G+W RKN
Sbjct: 158 LNPESNYKVEILLRRMVPYQIQYSNGSWSRKN 189
>AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 424 LYPQQRFKVRHVRRLWKPHMCRLPRGAWKRKN 519
L P+ +KV + R P+ + G+W RKN
Sbjct: 158 LNPESNYKVEILLRRMVPYQIQYSNGSWSRKN 189
>AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8
protein.
Length = 507
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 424 LYPQQRFKVRHVRRLWKPHMCRLPRGAWKRKN 519
L P+ +KV + R P+ + G+W RKN
Sbjct: 158 LNPESNYKVEILLRRMVPYQIQYSNGSWSRKN 189
>U29377-9|AAA68718.3| 405|Caenorhabditis elegans Hypothetical
protein K05F1.1 protein.
Length = 405
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 332 DDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMY 460
D C + RD+K +L P + PN ++ + IH+ LK MY
Sbjct: 335 DVCVIGWIRDEKNKLTPSAECLPNPLRP-STIIHANYLKDLMY 376
>Z93379-8|CAC35812.2| 354|Caenorhabditis elegans Hypothetical
protein F21H7.11 protein.
Length = 354
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -3
Query: 375 SRPLSSRVFSNQQSSIPKYSYPASRYPSLTIKSAVLFIRLSLMHSLGYFSQSVIHL 208
S+ +S+ NQ+S + + P + I + ++ LS+ HSLG++SQ +++L
Sbjct: 241 SKSVSTETQKNQKSFLVGIFFQTC-IPLVNIAAPIVI--LSVAHSLGFYSQEMMNL 293
>Z92786-7|CAB07209.1| 145|Caenorhabditis elegans Hypothetical
protein F47H4.10 protein.
Length = 145
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 539 EWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSI 649
EW++++LK+D + + + Y D L N T +SI
Sbjct: 84 EWDVEFLKVDKGTLFELVLAATYLDIKGLFNVTCKSI 120
>AF440508-1|AAL34096.1| 144|Caenorhabditis elegans SKR-5 protein.
Length = 144
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 539 EWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSI 649
EW++++LK+D + + + Y D L N T +SI
Sbjct: 83 EWDVEFLKVDKGTLFELVLAATYLDIKGLFNVTCKSI 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,754
Number of Sequences: 27780
Number of extensions: 359701
Number of successful extensions: 944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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