Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_F05
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    42   8e-05
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    29   0.77 
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   3.1  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   4.1  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.5  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +1

Query: 367 AFSEVLAYFTLCLWVVPFGLFVSLSANDYVLPT 465
           +FS+V ++  +C+W VP G+FVS +A D  LPT
Sbjct: 142 SFSQVASFMGVCVWSVPIGIFVSFTAADNTLPT 174


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 358 VYYAFSEVLAYFTLC--LWVVPFGLFVSLSANDYVLPT 465
           + YAF + + Y  LC  +W+  F  F+S+S     L T
Sbjct: 317 IAYAFEQAMLYVPLCPQIWLDGFSYFLSISDEQRALQT 354


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 556  TATVDCIFSIS-ATDNPSERYCHP 488
            TA++DC FS+S A     E YC P
Sbjct: 954  TASIDCFFSLSQAAAALGEPYCRP 977


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 7/27 (25%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
 Frame = -2

Query: 264 VPQQKQVQKEYSIRDDL--FSKHCIIF 190
           +P++ ++ K+Y++++DL  F+K+  ++
Sbjct: 3   IPEESEINKDYTVQEDLDEFAKYTCVY 29


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 515 ICRGNRKNTVYCRCSVTLRSXFYPTGTRRHSDLTFAS 625
           +C G R+N     C + ++   +       SD+ FAS
Sbjct: 204 VCDGVRENARLNNCDINVKKLLWGVDPPEFSDIVFAS 240


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -2

Query: 438 EGHEKTEGNHP*TEREVGQHLRKSVVHRSEVLEGQIMMNRERHQCGQETEAGHPDRGEVP 259
           EG    + + P  +    +HLRK  +   +  EGQ    +E     Q TE  H  +  +P
Sbjct: 719 EGQHTRQESLPSQQTTETKHLRKESIPSKQPTEGQ-HARQESLPSQQTTETKHLRKESIP 777

Query: 258 QQK 250
            ++
Sbjct: 778 SKQ 780


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 327 MNRERHQCGQETEAGHP---DRGEVPQQKQVQKEYSIRDD 217
           +N+   +CGQ T++ HP     GE+  +   Q EY  R D
Sbjct: 34  LNKSALRCGQATDSTHPHILQPGELTPRISAQ-EYKTRRD 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,831
Number of Sequences: 5004
Number of extensions: 52114
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)