Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_F05
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 29 3.2
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 29 3.2
06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776... 28 7.5
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 28 7.5
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 28 7.5
03_05_0867 - 28381891-28383018 28 7.5
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 27 9.9
>07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 273 GPGDQLQFLDRTDDARGSSLSGLQVLRSGVLR-FFGGAGLLHALSMGGSLRSFRVPLSKR 449
GPG D TD+A+ ++ L V R G L F+ AG+L +++ L S + R
Sbjct: 1236 GPGATYTRCDVTDEAQVAAAVDLAVARHGALDVFYSNAGVLGSIA-PAPLASLDLGEFDR 1294
Query: 450 LRATNDRREAPA 485
+ A N R A
Sbjct: 1295 VMAVNARAAVAA 1306
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 140 LLPWL*PLAYIIWPRL*KIIQCLLNKSSRMLYSFCTCFCCGTSP 271
L P L + IWPRL K+ Q +L + + +F FC + P
Sbjct: 1337 LYPLLEHIQKYIWPRLCKLDQLILYELHYQMITFGKVFCSKSKP 1380
>06_02_0133 +
12176059-12176238,12177244-12177362,12177515-12177612,
12177811-12177870,12177920-12177990,12178082-12178276,
12178395-12178441,12178532-12178598,12178660-12178665,
12178689-12178789,12179014-12179115,12179182-12179323,
12179578-12179661,12179760-12180080
Length = 530
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 325 HHYLAFKYFGAVYYAFSEVLAYFTLCLWVVPFGLFVSLSANDYV 456
H++L FG ++ F V T C W+ P F L A DY+
Sbjct: 110 HNFLTIMSFG-IFGVFISVAIVSTGCYWLFPKVGFGDLGAVDYL 152
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = -1
Query: 391 SRPAPPKKRSTPLRST*RPDNDEPRASSVRSRN*SWSPGPRGSPAAEAGAEG 236
SR P K S P R R + P AS R P PR + A AGA G
Sbjct: 243 SRQQPGKMVSVPAREKGRAPSPVPAASGKRY------PSPRSNSPARAGAAG 288
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -1
Query: 391 SRPAPPKKRS-----TPLRST*RPDNDEPRASSVRSRN*SWSPGPRGSP 260
S P PP+KR +P R + R + PR RSR+ S S G SP
Sbjct: 43 SPPLPPRKRRLSPTPSPTRRSSRSRSRSPRRGRSRSRSRSRSRGRSASP 91
>03_05_0867 - 28381891-28383018
Length = 375
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 424 DRREPPIDRA*SRPAPPKKRSTPLRST*RPDNDEPRASSVRSRN*SWSPGP 272
D PP A +R P K+RS P R + P + +P +S ++ P P
Sbjct: 35 DPSAPPAAAAAARKLPVKRRSPPPRPS-SPSSSDPASSDPAAKQQPQQPPP 84
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 412 PPIDRA*SRPAPPKKRSTPLRST*RPDNDEPRAS 311
PP+ R S+P PP + PL +T ++E +A+
Sbjct: 145 PPLKRPESQPPPPPPSTPPLTTTGYSTDEEDQAT 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,151,915
Number of Sequences: 37544
Number of extensions: 362294
Number of successful extensions: 1096
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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