Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_F05
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical ... 29 2.2
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 6.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 6.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 6.7
Z83218-2|CAB05687.1| 705|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical p... 27 8.8
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 27 8.8
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 27 8.8
>AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical
protein Y97E10AR.6 protein.
Length = 446
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 349 FGAVYYAFSEVLAYFTLCLWVVPFGLFVSLSANDYVLPTTEEKHPLLGDS 498
F V+ FS + A+F C + PF + S++ ++ P ++ + + +S
Sbjct: 14 FSRVFSVFSPISAFFCFCFSIFPFSVPDIFSSHSFLHPLSKIRFRAINES 63
>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
protein ZK593.5 protein.
Length = 1326
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 382 APPKKRSTPLRST*RPDNDEPRASSVRSRN*SWSPGPRGSPAAEAGAEG 236
APPKK ST +P +PR S S+ +P + PAA+A G
Sbjct: 181 APPKKASTTTAPVSKPSLSKPRQSLAPSKPAEVTP-QKPVPAAQASEAG 228
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = -1
Query: 430 RKDRREPPIDRA*SRPAPPKKRSTPLRST*RPDNDEPRASSVRSRN*SWSPGPRGSP 260
R R+ PP P PP K S PL + P S R S P P GSP
Sbjct: 226 RGKRQAPPAGSP--PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP 280
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = -1
Query: 430 RKDRREPPIDRA*SRPAPPKKRSTPLRST*RPDNDEPRASSVRSRN*SWSPGPRGSP 260
R R+ PP P PP K S PL + P S R S P P GSP
Sbjct: 247 RGKRQAPPAGSP--PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP 301
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = -1
Query: 430 RKDRREPPIDRA*SRPAPPKKRSTPLRST*RPDNDEPRASSVRSRN*SWSPGPRGSP 260
R R+ PP P PP K S PL + P S R S P P GSP
Sbjct: 232 RGKRQAPPAGSP--PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP 286
>Z83218-2|CAB05687.1| 705|Caenorhabditis elegans Hypothetical
protein C31A11.5 protein.
Length = 705
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +1
Query: 319 AVHHYLAFKYFGAVYYA-----FSEVLAYFTLCLWVVPF 420
++H Y +F+ F +YYA S + A+F CL+ +PF
Sbjct: 618 SIHFYSSFQIF--MYYAVPTTVLSYIFAFFWSCLFEIPF 654
>Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 286 SFSFLTALMTLAVHHYLAFKYFGAVYYAFSEVLAYFTLCLWVVPFGLFVSLSANDYVLPT 465
SFSFL+ + ++ + + G Y S + F LC +VVPF LF +L ++LP
Sbjct: 153 SFSFLSEVSYSSMT--MVGSFLGQDYIIGSHL---FWLCFFVVPFCLFFTLIL--FILPE 205
Query: 466 T 468
T
Sbjct: 206 T 206
>Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 286 SFSFLTALMTLAVHHYLAFKYFGAVYYAFSEVLAYFTLCLWVVPFGLFVSLSANDYVLPT 465
SFSFL+ + ++ + + G Y S + F LC +VVPF LF +L ++LP
Sbjct: 153 SFSFLSEVSYSSMT--MVGSFLGQDYIIGSHL---FWLCFFVVPFCLFFTLIL--FILPE 205
Query: 466 T 468
T
Sbjct: 206 T 206
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 35 QNITKSRRNIKQKVHKESCYSCIY*VIYLFLFKECLLPW 151
QNI+ + RN+ V + S +Y VI LF+ + W
Sbjct: 4423 QNISTTMRNVSSSVRQMSWTQLLYAVIILFIRAGLAIGW 4461
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 35 QNITKSRRNIKQKVHKESCYSCIY*VIYLFLFKECLLPW 151
QNI+ + RN+ V + S +Y VI LF+ + W
Sbjct: 4415 QNISTTMRNVSSSVRQMSWTQLLYAVIILFIRAGLAIGW 4453
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,013
Number of Sequences: 27780
Number of extensions: 317173
Number of successful extensions: 1009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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