Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_E23
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 30 0.25
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 28 1.0
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 28 1.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.4
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 27 2.4
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.1
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.5
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 26 5.5
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 26 5.5
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 5.5
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 7.2
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 9.5
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.5
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 9.5
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 322 NIDSPELSKKFENRYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISDIDLGPSTNLP 501
N+ S ++ K +N Y+ DG+ +K + I + + + V + I DI + TN+P
Sbjct: 286 NLSSELVAAKLKNSYLMDGMTLKLVDIA----VSYSVSGLSGVVKNPIQDIKITSDTNVP 341
Query: 502 I 504
+
Sbjct: 342 V 342
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 545 SNHCNMLLHSFQNLIGRLVEGPRSISLILLFGT-SFVCGNFCSI*SSQVIPSVFISIPS 372
S+ C +L F ++ R P + +L+LLF F+ S S+ VI SVFISI S
Sbjct: 133 SSVCKPILGKFSDITSR----PMTYTLVLLFYVIGFIVVASSSTISAYVIGSVFISIGS 187
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 28.3 bits (60), Expect = 1.0
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Frame = +1
Query: 100 KMSNCLRSFSHK---ILPINGIATTKNHSNRL----TRKIPMRTQFLEDFLHQRRIS-SC 255
+ S L S HK IL N + NRL T+ +P +F DFLH+ + C
Sbjct: 374 QFSKFLTSDMHKFSTILDSNELKDIYLSKNRLIPSVTKSLPSAMEFDADFLHEVDVCIDC 433
Query: 256 QTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENRYINDGIEMKTLGITCD 411
T + DS+ + T+ E + +Y DG+EM+++ + D
Sbjct: 434 LTLT--------DSLQAALTLYKTAVFEAFENLAQQYFTDGVEMRSVRKSSD 477
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 410 SQVIPSVFISIPSLMYLFSNFFESSG 333
S + S + SIPS+ + S+FF++SG
Sbjct: 826 SSIASSSYTSIPSISSIASSFFDASG 851
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = +1
Query: 133 KILPINGIATTKNHSNRLTRKIPMRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSD 312
K+L ++ +NH+ +L ++ +F + +S+ L +N +Y++D
Sbjct: 229 KMLEVSERVVFENHAAKLKSNFDRAKWYMGNFYNP--VSTAINRVVYSLPRNSKDVYYTD 286
Query: 313 TIGNIDSPEL 342
+GNI + +
Sbjct: 287 EVGNITTSHM 296
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 151 GIATTKNHSNRLTRKIPMRTQFLEDFLHQRRIS 249
GIA TK HS + Q+L +F+HQR+ S
Sbjct: 489 GIALTKLHSQQYNESTLF--QYLSEFVHQRQKS 519
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 524 VAYCSGSTPTEAQSTPQANPDGKP 595
+AY G+ P Q+ P NP G P
Sbjct: 37 MAYHPGNAPLFTQAPPHTNPQGPP 60
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 298 IYFSDTIGNIDSPELSKKFENRY 366
IYF DT+GN + S+ +N Y
Sbjct: 497 IYFYDTLGNYQEDDRSEDMQNFY 519
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 164 VVAIPLIGNILCENDRKQLDIFSDNVIHSYRWKF 63
VVAI +G ++QL + +NVI S+ + F
Sbjct: 45 VVAIGFVGGSDLSKQQEQLSVNGENVIDSFDYAF 78
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +1
Query: 187 TRKIPMRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFEN 360
T KI + + Q R+S C+ + ++ + D + + +I ++D+PE+ KF++
Sbjct: 196 TTKIRSSHRITSQSIKQIRLSFCK---RFLIFNSTDRVIRTVSIQDLDNPEVEHKFQD 250
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 548 PTEAQSTPQANPDGKPSEEQLMK 616
PT S P A+P G P EE+ K
Sbjct: 293 PTATTSAPSASPTGVPVEEESHK 315
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 145 INGIATTKNHSNRLTRKIPMRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSDTIGN 324
+ + +K +NRL+ MR Q L ++ ++ + + LEK V +IY S N
Sbjct: 146 VEELLLSKRSTNRLSLLAFMRNQQLNYEAYETKLLEDASTIEKSLEKEVKTIYDS----N 201
Query: 325 IDSPELS 345
I SP+ S
Sbjct: 202 IASPKES 208
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Frame = +1
Query: 403 TCD----DYIEQKLPHTNEVPNS 459
TCD DYIEQ PH E+ N+
Sbjct: 290 TCDGFTYDYIEQNFPHEAELRNN 312
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 9.5
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 322 NIDSPELSKKFEN-RYINDGIEMKTLGIT-CDDYIEQKLPHTNEVPNSRISDIDLGPSTN 495
+++ EL K + R + +K GI C + + Q L PNSRIS + LG S
Sbjct: 112 DLNEAELQKGLQELRQTTNYQHVKVSGICGCFERLLQCLDRFRSEPNSRISMLYLGASIG 171
Query: 496 LPIRF*KECSSILQWFDS 549
R K +S L+ F S
Sbjct: 172 NFDR--KSAASFLRSFAS 187
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 488 QPTCLSDFERNAVAYCSGSTPTEAQSTPQANPDGKPS 598
+P+ LS + V S STP AQ TPQ P P+
Sbjct: 400 KPSSLSTTDPTLVPQ-SSSTPKSAQKTPQKLPAFLPN 435
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 197 IFLVKRLEWFFVVAIPL 147
I L KR +W+FV +IP+
Sbjct: 426 IRLTKRYKWYFVASIPV 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,027
Number of Sequences: 5004
Number of extensions: 59104
Number of successful extensions: 187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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