Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_E23
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395 31 0.80
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991... 30 1.9
01_07_0357 + 43032552-43033034,43034054-43034383,43035210-430353... 29 4.3
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 28 5.6
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 28 7.5
02_02_0365 + 9488328-9488583,9489343-9489495,9491159-9491451,949... 28 7.5
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 28 7.5
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 27 9.9
>03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395
Length = 704
Score = 31.1 bits (67), Expect = 0.80
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 241 RISSCQTASKCVLEKNVDSI--YFSDTIGNIDSPELSKKFENRYINDGIEMKTLGITCDD 414
R+S+C + LEK+ +SI T N+D ++ F NR EM+ LG C
Sbjct: 130 RLSNCSIPPEAYLEKSCNSIRCVLPSTKANVDGTNVTDPFLNR-----SEMRRLGSDCRG 184
Query: 415 YIEQKLPHTNEVPNSRISDIDL 480
+ + P +++ ++L
Sbjct: 185 LVSASIYSNTAGPALQLTALEL 206
>01_05_0099 -
18098169-18098390,18098878-18098972,18099063-18099131,
18099277-18099352,18101412-18101524,18104137-18104185,
18104540-18104572,18105446-18105552,18106892-18106990,
18107122-18107203
Length = 314
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 460 YCLVLHSCVVTFVQYNHRK 404
YC ++ +C+VTF YNH K
Sbjct: 99 YCFMIDACLVTFSVYNHLK 117
>01_07_0357 +
43032552-43033034,43034054-43034383,43035210-43035325,
43035589-43035679,43035790-43035860,43036202-43036258,
43036809-43036860,43037139-43037170,43037686-43037753,
43038148-43038353
Length = 501
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 515 RNAVAYCSGSTPTEAQSTPQANPDGKPSEEQLMKVFHVLSE 637
RN++A CS S + TP+A G P + H L +
Sbjct: 35 RNSLAICSASASGDPSPTPEAEGGGNPLLALWRRTLHPLGD 75
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 229 LHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENR 363
+H ++ C T +K L+ V + SD I N D P +++ E++
Sbjct: 372 VHHTGVAECDTDTKKKLKGTVTTRRNSDAIANDDPPSITQNKESK 416
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 440 RMKYQTVELVILI*DLQPTCLSDFERNAVAYCSGS-----TPTEAQSTPQANPDGKPSEE 604
R +Q E+ LI +P S+F + A G+ TPT QS P DG+ EE
Sbjct: 371 RSAFQLDEITCLI--TKPVSCSEFVKEAGRGGKGNLPLDGTPTIVQSEPWDGKDGEVIEE 428
Query: 605 QLMKVFHVLSESMPL 649
+ +++++ P+
Sbjct: 429 DEFSLEELMADNSPV 443
>02_02_0365 +
9488328-9488583,9489343-9489495,9491159-9491451,
9491538-9492105,9492503-9493011
Length = 592
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 96 TKNVQLFAIIFAQNITDQRDSYDKKPFQPLD*KDPDADTVS--GRFFTPASNFKLPNRLK 269
TK+ L ++ A ++ RDSY K P L K P A T S G+ K P++++
Sbjct: 181 TKDELLVSVRKAFSMLSGRDSYSKDPNFLLSPKLPTASTSSCDGKDQCTDKPMKGPSQME 240
Query: 270 VC 275
VC
Sbjct: 241 VC 242
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 192 KDPDADTVSGRFFTPASNFKLPNRLK 269
+DP+A +GRF P NFK P+ LK
Sbjct: 360 RDPNARLPNGRFLPPLFNFK-PHELK 384
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 310 DTIGNIDSPELSKKFENRYINDGIEM-KTLGITCDDYIEQKLPHTNEVPNSRISDIDLGP 486
D ++ ++ K++N I+ IE K G+T Y KLP T++VP + + P
Sbjct: 440 DVFEEAEANKVGGKYDNASIDYQIEFYKREGLT--HYSSAKLPITSDVPEGCVIIREHIP 497
Query: 487 STNL 498
TNL
Sbjct: 498 ITNL 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,687,273
Number of Sequences: 37544
Number of extensions: 327119
Number of successful extensions: 914
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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