Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_E23
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92973-2|CAB07492.2| 964|Caenorhabditis elegans Hypothetical pr... 33 0.18
AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical ... 30 1.6
AC024790-1|AAK84609.1| 315|Caenorhabditis elegans Hypothetical ... 29 2.2
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 29 2.2
Z69383-2|CAA93408.2| 318|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81494-5|CAB04053.1| 419|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL032657-8|CAB63370.1| 389|Caenorhabditis elegans Hypothetical ... 28 5.0
AL023835-9|CAA19493.2| 397|Caenorhabditis elegans Hypothetical ... 28 5.0
U40028-10|AAA81121.3| 363|Caenorhabditis elegans Serpentine rec... 28 6.7
>Z92973-2|CAB07492.2| 964|Caenorhabditis elegans Hypothetical protein
Y6G8.2 protein.
Length = 964
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +1
Query: 160 TTKNHSNRLTRKIPMRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPE 339
+ KN + L ++ +RT +ED +H + I +A++ + S D + +P
Sbjct: 844 SVKNIEHFLRVEVTLRTISVEDLVHLKEIFKTSSANR-KFDIKARSFDAEDLTPTLGAPS 902
Query: 340 LSKKFENRYIND----GIEMKTLGITCDDYIE 423
LS K E ++ +EM C DY+E
Sbjct: 903 LSNKIEQNVVHKKWFFKMEMDRRRAVCIDYLE 934
>AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical
protein T15B7.7 protein.
Length = 457
Score = 29.9 bits (64), Expect = 1.6
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Frame = +1
Query: 88 TLSLKMSNCLRSF-SHKILPINGIATT---------KNHSNRLTRKIPMRTQFLED---- 225
T+S + ++ RSF S KIL ++G+ + +N N L + + Q ED
Sbjct: 65 TVSFRTTDIWRSFISQKILHLSGLTVSFVPTNAVQFRNAHNYL-KDLKDEKQVYEDSGRM 123
Query: 226 --FLHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENRYINDGIEMKTLG 399
FLH + S+ ++ C++E D + +G D+ +L + F N G + L
Sbjct: 124 IEFLHNWKCSTRNSSQNCIIEMTNDLVK-KKLLGKEDA-KLMEMFLNDLTEMGFKFPIL- 180
Query: 400 ITCDDYIEQKLPHTNE 447
+D+++ P TNE
Sbjct: 181 -IENDFLDPYAPSTNE 195
>AC024790-1|AAK84609.1| 315|Caenorhabditis elegans Hypothetical
protein Y47D7A.3 protein.
Length = 315
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = +1
Query: 127 SHKILPINGIATTKNHSNRLTRKIP-MRTQFLEDFLHQR-----RISSCQTASKCVLEKN 288
+ K +P N T + S+ L K+P TQ L + + +SSC +
Sbjct: 189 NQKKIPSNMCLTRNHSSDPLPPKMPHASTQILSNARDRYIQCMINVSSCSEVQSALRLAE 248
Query: 289 VDSIYFSDTIGNIDSPELSKKFEN 360
+ I+ S T+G ++ + SK F+N
Sbjct: 249 ISLIFPSITVGKLNGIKNSKSFQN 272
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 356 SNFFESSGESMLPIVSLK*MLSTFFSNTHFEAVWQLEIRRWCKKSSRNC 210
++F + G+S + I L + +FF+ A++ E+ W KK+ + C
Sbjct: 282 NDFSKEYGDSSMAIGKLSSRIHSFFNKECESAIFNCELMLWDKKTKKLC 330
>Z69383-2|CAA93408.2| 318|Caenorhabditis elegans Hypothetical
protein F13E9.5 protein.
Length = 318
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 133 KILPINGIATTKNHSNRLTRKIPMRTQFLEDFLHQRRIS 249
K LP+ TKN++ + I + F ED + Q+R+S
Sbjct: 116 KDLPVTNRKATKNYTRAVKNAINQKADFEEDEVDQKRLS 154
>Z81494-5|CAB04053.1| 419|Caenorhabditis elegans Hypothetical
protein F02E9.7 protein.
Length = 419
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 187 TRKIP-MRTQFLEDFLHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENR 363
T IP + T + ++ + Q S S ++ D+IYF+ D P +FEN
Sbjct: 88 TGGIPILETTWAQNEVKQTMASLADEHSVQMILNMGDNIYFTGPTDEFD-PRFESRFENV 146
Query: 364 YINDGIEMKTLGI 402
Y N +++ L I
Sbjct: 147 YTNPSLQVPWLTI 159
>AL032657-8|CAB63370.1| 389|Caenorhabditis elegans Hypothetical
protein Y47H9C.8 protein.
Length = 389
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 229 LHQRRISSCQTASKCVLEKNVDSIYFSDTIGNIDSPELSKKFENRYINDGIEMKTL 396
L +R + Q + + LE+ ++ D ++ PE++ + R I DGI KTL
Sbjct: 16 LPAKRPGTSQNSIRAALEEKLERSPIEDLELQLEQPEINVEEVGRIIADGIIEKTL 71
>AL023835-9|CAA19493.2| 397|Caenorhabditis elegans Hypothetical
protein Y37A1B.10 protein.
Length = 397
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 361 RYINDGIEMKTLGITCDDYIEQKLPHTNEVPNSRISD 471
R + DG++ + C++ ++ ++PHT V NSRI D
Sbjct: 194 RVVEDGLQAS---LYCEEPLDFEVPHTYIVGNSRIFD 227
>U40028-10|AAA81121.3| 363|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 40 protein.
Length = 363
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 536 CNMLLHSFQNLIGRLVEGPRSISLILLFG 450
C +LL F+N+IGRL+ P ILL G
Sbjct: 69 CTILLQFFENVIGRLLIMPYQKGWILLPG 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,427,155
Number of Sequences: 27780
Number of extensions: 329523
Number of successful extensions: 1010
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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