Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_E23
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   2.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 355 ENRYINDGIEMKT----LGITCDDYIEQKLPHTNE 447
           E +Y +D  ++KT    + +TC+D + +K  H N+
Sbjct: 97  EGQY-HDDEDLKTFFHKIALTCEDDVHRKFLHVND 130


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 584 DGKPSEEQLMKVFHV 628
           +GKP+E  L  VFHV
Sbjct: 409 NGKPAEGMLTDVFHV 423


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 154  IATTKNHSNRLTRKIPMRTQFLEDFLHQRRISSCQT 261
            +ATT +H+N+L R+     Q     + Q + SS Q+
Sbjct: 1140 LATTASHANQLNRQGKQVIQTQYQVVSQAQTSSGQS 1175


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 95 DNVIHSYRWKF*NI*KMCRK 36
          D ++H + WK+ +I K C +
Sbjct: 31 DAIVHLFEWKWNDIAKECEQ 50


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -2

Query: 482 PRSISLILLFGTSFVCGNFCSI*SSQVIPSVFISIPSLMYLFSNFFESSGESML 321
           P S   +++   +F+   FC +     IP   I +P+LM  +      +  S++
Sbjct: 269 PSSTERMIIANLNFILHLFCLLDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLM 322


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 654 NSNGIDSEST*NTFMSCSSLGFP 586
           N NG+ +ES  +  + C + GFP
Sbjct: 218 NINGLSTESKADLPLLCPAQGFP 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,889
Number of Sequences: 438
Number of extensions: 3540
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)