Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_E17
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 60 2e-10
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 56 5e-09
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 52 5e-08
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 47 2e-06
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 45 1e-05
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 43 3e-05
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 41 2e-04
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 34 0.014
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 31 0.096
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 31 0.096
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 29 0.68
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 0.89
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 28 1.2
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S... 26 4.8
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 60.5 bits (140), Expect = 2e-10
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +1
Query: 259 GFSPLHWACKEGHLKIVEMLIKRGAR-INVTNMGDDTPLHLSAAHGHRPVVQLLLQNRVD 435
G + LH+A +G L IV++L + I ++ TPLH +AA G VV+ L+ R
Sbjct: 107 GQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAP 166
Query: 436 VNFTNEHGNSPLHYACFWGYNAIAEDLVLAGA 531
+N ++ +G +PLH+A G+ + +LV AGA
Sbjct: 167 LNTSDSYGFTPLHFALAEGHPDVGVELVRAGA 198
Score = 48.4 bits (110), Expect = 8e-07
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Frame = +1
Query: 217 LDDTEHDMNQGDDHGFSPLHWACKEGHLKIVEMLIKR-GARINVTNMGDDTPLHLSAAHG 393
+ + + +N DD +PLHWAC G + + L+K+ + + + TPL +S +
Sbjct: 23 IQNDPNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPLMISINNR 82
Query: 394 HRP---VVQLLLQNRVDVNFTNEHGNSPLHYACFWGYNAIAEDLV-LAGALVSIANKYGD 561
P + +L+ ++ VD T G + LHYA G +I + L A L+ + G
Sbjct: 83 SVPDNVIEELINRSDVDPTITTRGGQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQ 142
Query: 562 TPL 570
TPL
Sbjct: 143 TPL 145
Score = 46.8 bits (106), Expect = 2e-06
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Frame = +1
Query: 181 CREGNALQVRVWLDDTEHDMNQGDDHGFSPLHWACKEGHL--KIVEMLIKRG-ARINVTN 351
C G + L ++ D+ G++PL + + ++E LI R +T
Sbjct: 45 CSVGKVNTIYFLLKQPNIKPDEKDEAGWTPLMISINNRSVPDNVIEELINRSDVDPTITT 104
Query: 352 MGDDTPLHLSAAHGHRPVVQLLLQNRVD-VNFTNEHGNSPLHYACFWGYNAIAEDLVLAG 528
G T LH +A G +VQLL + + + G +PLH A G + + L+
Sbjct: 105 RGGQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQR 164
Query: 529 ALVSIANKYGDTPL 570
A ++ ++ YG TPL
Sbjct: 165 APLNTSDSYGFTPL 178
Score = 42.7 bits (96), Expect = 4e-05
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +1
Query: 187 EGNALQVRVWLDDTEHDMNQGDDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDT 366
+G V++ D + + D G +PLH A G +++V+ LI + A +N ++ T
Sbjct: 117 KGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFT 176
Query: 367 PLHLSAAHGHRPV 405
PLH + A GH V
Sbjct: 177 PLHFALAEGHPDV 189
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 199 LQVRVWLDDTEHDMNQGDDHGFSPLHWACKEGHLKIVEMLIKRGA 333
+QV +L +N D +GF+PLH+A EGH + L++ GA
Sbjct: 154 IQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGA 198
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 55.6 bits (128), Expect = 5e-09
Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Frame = +1
Query: 157 EMEDIFQWCREGNALQVRVWLDDTEHDMNQGDDHGFSPLHWACKEGHLKIVEMLIKRGAR 336
+++D+ CR + + ++ ++++ D++G S LH A GH+ +V+ +I +
Sbjct: 2 DVDDLIYACRAADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNK 61
Query: 337 --INVTNMGDDTPLHLSAAHGHRPVVQLLLQNRVDVNFTNEHGNSPLHYA 480
IN N +T +H +A +GH + +LLL+ D + N + SP++ A
Sbjct: 62 EVINAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEA 111
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/103 (28%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Frame = +1
Query: 271 LHWACKEGHLKIVEMLIKRGAR-INVTNMGDDTPLHLSAAHGHRPVVQLLLQ--NRVDVN 441
L +AC+ ++++ +I++ + ++ + ++ LH+++A+GH VVQ ++ N+ +N
Sbjct: 6 LIYACRAADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVIN 65
Query: 442 FTNEHGNSPLHYACFWGYNAIAEDLVLAGALVSIANKYGDTPL 570
NE GN+ +H+A G+ I + L+ AG I N Y +P+
Sbjct: 66 AQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPI 108
Score = 39.1 bits (87), Expect = 5e-04
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = +1
Query: 238 MNQGDDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPLHLSAAHGHRPVVQLL 417
+N ++ G + +HWA GH +I ++L++ G ++ N+ + +P++ + + V+ L
Sbjct: 64 INAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQKVMDLF 123
Query: 418 L 420
L
Sbjct: 124 L 124
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 52.4 bits (120), Expect = 5e-08
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Frame = +1
Query: 178 WCREGNALQVRVWLDDTEHDMNQ-GDDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNM 354
W + + +L + D+N G D +P+HWA K G +K V L++ GA + +
Sbjct: 40 WAALNQQIPICKFLLEHGADVNAIGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDK 99
Query: 355 GDDTPLHLSAAHGHRPV-VQLLLQNRVDVNFTNEHGNSPLHYACFWGYNAIAEDLVLAGA 531
LHL A H P+ V LL + V+ ++ ++PL +A + G I L+ GA
Sbjct: 100 QGFNCLHL-AVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGA 158
Query: 532 LVSIANKYGDTPL 570
V ++ TPL
Sbjct: 159 DVLATDEDKMTPL 171
Score = 50.4 bits (115), Expect = 2e-07
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 160 MEDIFQWCREGNALQVRVWLDDTEHDMNQGDDHGFSPLHWACKEGHLKIVEMLIKRGARI 339
M +F +G V+ + + D+N D+ G + LHWA + I + L++ GA +
Sbjct: 1 MGSLFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADV 60
Query: 340 NVTNMGD--DTPLHLSAAHGHRPVVQLLLQNRVDVNFTNEHGNSPLHYACFWGYNAIAED 513
N GD P+H +A G V L+Q+ D ++ G + LH A +
Sbjct: 61 NAIG-GDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVHAASPLLVVY 119
Query: 514 LVLAGALVSIANKYGDTPL 570
L+ V + + TPL
Sbjct: 120 LLHLDISVDLRDDQQHTPL 138
Score = 43.2 bits (97), Expect = 3e-05
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +1
Query: 250 DDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPLHLSAAHGHRPVVQLLLQNR 429
D GF+ LH A +V L+ +++ + TPL ++ HG+ P+ LL+
Sbjct: 98 DKQGFNCLHLAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWG 157
Query: 430 VDVNFTNEHGNSPLHYACFWG 492
DV T+E +PLH++ G
Sbjct: 158 ADVLATDEDKMTPLHWSIVGG 178
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +1
Query: 211 VWLDDTEHDMNQGDDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPLHLSAAH 390
V+L + ++ DD +PL WA G+ I L++ GA + T+ TPLH S
Sbjct: 118 VYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVG 177
Query: 391 GHRPVVQLLLQ 423
G+ ++L+L+
Sbjct: 178 GNLKCMKLILK 188
Score = 31.1 bits (67), Expect = 0.13
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 235 DMNQGDDHGFSPLHWACKEGHLKIVEMLIKRG 330
D+ D+ +PLHW+ G+LK +++++K G
Sbjct: 159 DVLATDEDKMTPLHWSIVGGNLKCMKLILKEG 190
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 47.2 bits (107), Expect = 2e-06
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 250 DDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPL 372
DD G + LHWAC GH++++++L++ A I V N TPL
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPL 285
Score = 32.3 bits (70), Expect = 0.055
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 448 NEHGNSPLHYACFWGYNAIAEDLVLAGALVSIANKYGDTPL 570
++ G++ LH+AC G+ + + L+ A A + + N+ TPL
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPL 285
Score = 29.1 bits (62), Expect = 0.51
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 364 TPLHLSAAHGHRPVVQLLLQNRVDVNFTNEHGNSPL 471
T LH + + GH +++LLL+ D+ N +PL
Sbjct: 250 TSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPL 285
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 44.8 bits (101), Expect = 1e-05
Identities = 16/44 (36%), Positives = 30/44 (68%)
Frame = +1
Query: 241 NQGDDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPL 372
N D++G++P+H A GH ++++L++RG IN+ + +TPL
Sbjct: 31 NAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGETPL 74
Score = 42.3 bits (95), Expect = 5e-05
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 352 MGDDTP-LHLSAAHGHRPVVQLLLQNRVDVNFTNEHGNSPLHYACFWGYNAIAEDLVLAG 528
M TP + ++A+ G VV L + + N +E+G +P+H A +G++ + + LV G
Sbjct: 1 MSTTTPNIWIAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERG 60
Query: 529 ALVSIANKYGDTPL 570
++I ++ G+TPL
Sbjct: 61 GDINIRDQDGETPL 74
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 265 SPLHW-ACKEGHLKIVEMLIKRGARINVTNMGDDTPLHLSAAHGHRPVVQLLLQNRVDVN 441
+P W A +G +V + G N + TP+H + ++GH ++++L++ D+N
Sbjct: 5 TPNIWIAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDIN 64
Query: 442 FTNEHGNSPLHYAC 483
++ G +PL + C
Sbjct: 65 IRDQDGETPL-FVC 77
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 43.2 bits (97), Expect = 3e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 250 DDHGFSPLHWACKEGHLKIVEMLIKR-GARINVTNMGDDTPLHLSAAHGHRPVVQLLLQN 426
D F L AC+ G L++V+ L++ IN + D +PL L++ GH PVV+ LL+N
Sbjct: 49 DTQEFLELCEACRRGDLEVVKSLVENYNTPINQVDQFDYSPLVLASLCGHEPVVKFLLEN 108
Score = 35.1 bits (77), Expect = 0.008
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 157 EMEDIFQWCREGNALQVRVWLDDTEHDMNQGDDHGFSPLHWACKEGHLKIVEMLIKRGA 333
E ++ + CR G+ V+ +++ +NQ D +SPL A GH +V+ L++ GA
Sbjct: 52 EFLELCEACRRGDLEVVKSLVENYNTPINQVDQFDYSPLVLASLCGHEPVVKFLLENGA 110
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/83 (28%), Positives = 38/83 (45%)
Frame = +1
Query: 340 NVTNMGDDTPLHLSAAHGHRPVVQLLLQNRVDVNFTNEHGNSPLHYACFWGYNAIAEDLV 519
++ N + LHL+AA G L DVN + G +PLHYA + + I +L+
Sbjct: 856 SLVNESGRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLL 915
Query: 520 LAGALVSIANKYGDTPLDXTRGQ 588
GA + G P+D + +
Sbjct: 916 SNGAKPDVIGASGKKPIDLSSSE 938
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 235 DMNQGDDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPLHLSAA 387
D+N+ D G++PLH+A H I L+ GA+ +V P+ LS++
Sbjct: 887 DVNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKPIDLSSS 937
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 430 VDVNFTNEHGNSPLHYACFWGYNAIAEDLVLAGALVSIANKYGDT 564
VD NFTN + N+ Y FWG + + G VS + YGDT
Sbjct: 219 VDFNFTNVY-NTSCEYPRFWGEDGGPVSIQFKGCYVSDYDHYGDT 262
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 31.5 bits (68), Expect = 0.096
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 256 HGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPLHLSAAH 390
H +PLH+A + + K+V L++ GA + N TP +S +
Sbjct: 432 HTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTGN 476
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +1
Query: 406 VQLLLQNRVDVNF------TNEHGNSPLHYACFWGYNAIAEDLVLAGALVSIANKYGDTP 567
++ L N + +NF + H ++PLHYA + L+ GA ++ N G TP
Sbjct: 410 LEYLRSNDLSINFQFYPKNVHLHTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTP 469
Query: 568 LDXTRG 585
+ + G
Sbjct: 470 FEISTG 475
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 31.5 bits (68), Expect = 0.096
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 337 INVTNMGDDTPLHLSAAHGHRPVVQLLLQNRVDVNFTNEHGNSPLHY 477
+N + +TPLHL+A G + +V+ LL + D+N+ + N+ Y
Sbjct: 82 VNAYDKNKNTPLHLAAMAGRQDIVEALLLH-PDINYNLVNANNKKAY 127
Score = 28.7 bits (61), Expect = 0.68
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 430 VDVNFTNEHGNSPLHYACFWGYNAIAEDLVL 522
VDVN +++ N+PLH A G I E L+L
Sbjct: 80 VDVNAYDKNKNTPLHLAAMAGRQDIVEALLL 110
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 193 NALQVRVWLDDTEHDMNQGDDHGFSPLHWACKEGHLKIVEMLI 321
N V+ L + D+N D + +PLH A G IVE L+
Sbjct: 67 NVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALL 109
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 250 DDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPL 372
D+ G + LHWA + +++ LI +GA N+ +T L
Sbjct: 354 DELGHAALHWAAAVAKMPLLQALIHKGANPLRGNLTGETAL 394
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 28.3 bits (60), Expect = 0.89
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 334 RINVTNMGDDTPLHLSAAHGHRPVVQLLLQNR-VDVNFTNEH-GNSPLHYACFWGYNAIA 507
RIN + T LH++ + V+ LLQ++ +DV +E G + LH A + G N A
Sbjct: 44 RINQKDRYGRTVLHIAVSENKNSFVRSLLQHKGIDVFVQDEESGYTALHRAIYVG-NLEA 102
Query: 508 EDLVLA 525
L+L+
Sbjct: 103 ASLLLS 108
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 205 VRVWLDDTEHDMNQGDDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPLHLSA 384
V + ++ E+ + G+D FSP C E +K + + ARI+ PLH
Sbjct: 137 VYITAEEIENKLILGNDIHFSPTGLICLENTIKGAVVPLDEVARISGLAKAHKIPLHCDG 196
Query: 385 A 387
A
Sbjct: 197 A 197
>SPAC105.02c |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 170
Score = 25.8 bits (54), Expect = 4.8
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = +1
Query: 166 DIFQWCREGNALQVRVWLDDTE--HDMNQGDDHGFSPLHWAC------KEGHLKIVEMLI 321
D C + +L+ WL D + N+ G +PLH+A +E L++VEML+
Sbjct: 49 DCVHVCTKYGSLECLDWLLDISGVNLNNRCRMTGDTPLHFAVMFIKKDQETALRMVEMLM 108
Query: 322 KRGARINVTNMGDDTPLHLSAAHGH 396
+ GA +TN P+ L H
Sbjct: 109 EVGADPLLTNNDGFRPIDLVPGDFH 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,757
Number of Sequences: 5004
Number of extensions: 41177
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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