Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_E12
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   109   2e-25
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   108   4e-25
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.4  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   4.3  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   4.3  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.7  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   10.0 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   10.0 

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  109 bits (262), Expect = 2e-25
 Identities = 47/78 (60%), Positives = 55/78 (70%)
 Frame = +3

Query: 48  SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRH 227
           SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA          M +
Sbjct: 7   SFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSY 66

Query: 228 LKIVRRRFRNGFKEGKPT 281
           LK V R F+NGF+ GKPT
Sbjct: 67  LKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  108 bits (259), Expect = 4e-25
 Identities = 48/85 (56%), Positives = 56/85 (65%)
 Frame = +3

Query: 48  SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRH 227
           SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA          M +
Sbjct: 7   SFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSY 66

Query: 228 LKIVRRRFRNGFKEGKPTPPKKAVA 302
           LK V R F+NGF+ GKP     A A
Sbjct: 67  LKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 238 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 125
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +3

Query: 66  NKTHTLCRRCGRSSYHIQKSKCAQCGYP 149
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 129 ILIFECDMTIYHIFCITYGSYFGAYRSLK 43
           +LI+ CD  +++  CI + S +  + S+K
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVK 239


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 350 LVFLIFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 243
           L+  IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 13  LLPFIFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 134 PMWISCSKITILPLVSEG*AQEDYW 208
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 57   KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 149
            KR N    L  R       +Q ++C  CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,574
Number of Sequences: 5004
Number of extensions: 24987
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)