Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_D19
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 171 1e-43
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 75 1e-14
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 55 1e-08
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 51 2e-07
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 50 4e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 47 3e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 5e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 43 3e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 43 4e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 6e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 42 6e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 2e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 40 3e-04
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 39 7e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 7e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 38 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 0.001
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.007
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 34 0.021
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.048
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 32 0.063
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 31 0.19
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.25
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.25
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.25
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 4.1
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 4.1
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 26 5.5
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 7.2
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 25 7.2
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.5
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 171 bits (415), Expect = 1e-43
Identities = 79/108 (73%), Positives = 89/108 (82%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
ASLYVG+L +TEAMLFE F++ GPV SIRVCRD +TRRSLGYAYVNF D E+ALD
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 510 TMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDT 653
+N+ +IKGRP RIMWSQRDPSLRK G GNVFIKNLD +IDNKAL DT
Sbjct: 140 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDT 187
Score = 43.6 bits (98), Expect = 3e-05
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
++Y+ +L ++ITE + F G + S+ + +D + G+ +VN+ A++A+D
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320
Query: 513 MNFDIIKGRPIRIMWSQ----RDPSLRK-------------SGVGNVFIKNLDKSIDNKA 641
+N KG+ + + +Q R+ LRK GV N+FIKNL +D++
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV-NLFIKNLQDEVDDER 379
Query: 642 L 644
L
Sbjct: 380 L 380
Score = 41.9 bits (94), Expect = 8e-05
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
++++ +L I L + FS G +LS +V D + GY +V+F A A++
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAK-GYGFVHFDSVESANAAIEH 227
Query: 513 MNFDIIKGRPIRIMW--SQRDPSLR----KSGVGNVFIKNLDKSIDNKALFD 650
+N ++ + + + S+R+ + K+ NV+IKNLD I + D
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSD 279
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 74.5 bits (175), Expect = 1e-14
Identities = 35/108 (32%), Positives = 61/108 (56%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
A++Y+G+L +T+++LFE AGPV++I + RD + G+ + F D E A
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 510 TMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDT 653
+N + G+PIR+ + +D + N+F+ NLD +D + L+DT
Sbjct: 71 ILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDT 118
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +3
Query: 279 IVLNSIKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSI-RVCRDMITRRSL 455
I +N + G + A+L+VG+L + E +L++ FS G ++ +V RD RS
Sbjct: 82 IRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDE-NGRSK 140
Query: 456 GYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWS 560
GY +V++ A+ A++ MN + +PI + ++
Sbjct: 141 GYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA 175
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCR-DMITRRSLGYAYVNFQQPTDAERAL 506
A+++VG+L +TE++L+ F G ++S+ + R + RS YA+V F +P DA+ A+
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRS--YAFVEFDEPEDAKEAM 63
Query: 507 DTMNFDIIKGRPIRI 551
+ MN+ I+ R IR+
Sbjct: 64 ENMNYSILCDRCIRV 78
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/110 (25%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Frame = +3
Query: 321 YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAER 500
Y +L++G+L +TEA + + ++T G + +++ R+ T + GY +V F P +A
Sbjct: 90 YQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASS 149
Query: 501 ALDTMNFDIIKG--RPIRIMWSQ----RDPSLRKSGVGNVFIKNLDKSID 632
A+ +MN I G ++ W+ R+ S+ K+ ++F+ +L +++
Sbjct: 150 AM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVN 198
Score = 42.7 bits (96), Expect = 4e-05
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTA-GPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
S++VGDL ++ E ++ F++ S ++ D T S GY +V F D + AL
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 510 TMNFDIIKGRPIRI 551
M I RPIR+
Sbjct: 247 EMQGQICGDRPIRV 260
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 49.6 bits (113), Expect = 4e-07
Identities = 31/79 (39%), Positives = 43/79 (54%)
Frame = +3
Query: 315 PSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDA 494
PS P + +VG+L D+TE L + F V SIR+ D +T RS G+ YV F+
Sbjct: 89 PSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTL 146
Query: 495 ERALDTMNFDIIKGRPIRI 551
AL D++ GRP+RI
Sbjct: 147 SAALALSGEDLM-GRPVRI 164
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/81 (34%), Positives = 43/81 (53%)
Frame = +3
Query: 318 SYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE 497
S P +++VG+L + TE L F G + SIR+ D + R G+ YV F A+
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 498 RALDTMNFDIIKGRPIRIMWS 560
+ ++ MN I GRP R+ +S
Sbjct: 422 KCVE-MNGHFIAGRPCRLDFS 441
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = +3
Query: 306 PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP 485
P S +++VG L ++ + L ++F G ++ RV D + RS GY YV+F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 486 TDAERALDTMNFDIIKGRPIRIMWSQRDPS 575
A+ A+ I GR + + S P+
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPA 344
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = +3
Query: 324 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERA 503
P ++++ L D E+ + +F+ GP+ IRV R+ +T +S+GYA+V F++ D + A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 504 LDTMNFDIIKGRPI 545
++ GR I
Sbjct: 158 YKASAGLMLNGRRI 171
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VG+L + E L+ F G + +R+ RD T G+AY+ F+ ++AL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 516 NFDIIKGRPIRIM 554
+ +GR +RIM
Sbjct: 332 EKKMPEGRTLRIM 344
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VG++ D++E + E F+ GPV + ++ D T GY + F A+ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 516 NFDIIKGRPIRIMWSQRDPSLRKS 587
N + R IR+ + DP +S
Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQS 92
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 42.3 bits (95), Expect = 6e-05
Identities = 23/79 (29%), Positives = 43/79 (54%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
+++V L + +T L++ F AGPV ++ RD I+ RS G AYV F D+ +A
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCH-EDSVQAAIA 299
Query: 513 MNFDIIKGRPIRIMWSQRD 569
++ + G P+ + ++ +
Sbjct: 300 LSGKRLLGLPVIVQLTEAE 318
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 42.3 bits (95), Expect = 6e-05
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 324 PMASLYVGDLHSDITEAMLFEKFSTAGP-VLSIRVCRDMITRRSLGYAYVNFQQPTDAER 500
P S++VGDL ++ LF F + P S ++ D +T S Y +V F + +
Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQH 239
Query: 501 ALDTMNFDIIKGRPIRIMWSQRDPSLRKS 587
AL M + +GRP+RI S P R S
Sbjct: 240 ALMHMQGYLCQGRPLRI--SVASPKSRAS 266
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 40.3 bits (90), Expect = 2e-04
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP-TDAERALDT 512
L+VG+L D + L F AG V S+R+ D + R GYA+V F P TD
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 513 MNFDIIKGRPIRI 551
+ I K R I I
Sbjct: 154 FHHTIYKERKINI 166
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
LYVG L E + FS GPVL +R+ R+ T S YA++ F+ A +TM
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 516 NFDIIKGR 539
+ ++ G+
Sbjct: 167 HNYLLYGK 174
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 38.7 bits (86), Expect = 7e-04
Identities = 25/102 (24%), Positives = 45/102 (44%)
Frame = +3
Query: 288 NSIKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAY 467
NS + PG + P A + V ++ + + L + F G G A+
Sbjct: 189 NSTPVEPGEDTIPTA-IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAF 247
Query: 468 VNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGV 593
NF +P +A+ + T+N I GR +R+ W ++ P+ + V
Sbjct: 248 ANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQLPAAEREKV 289
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.7 bits (86), Expect = 7e-04
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +3
Query: 324 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERA 503
P +YVG++ ++ E + + F +GPV S ++ D + + GY + + P A A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 504 LDTMN 518
+ +N
Sbjct: 63 VRNLN 67
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 38.3 bits (85), Expect = 0.001
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Frame = +3
Query: 303 NPGPPSYPM--ASLYVGDLHSDIT--EAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 470
+P P+ P+ ++LYV +L + ++ L + FS G +LS + + S GY +V
Sbjct: 371 SPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFV 430
Query: 471 NFQQPTDAERALDTMNFDIIKGRPIRIMWSQR-DPSLRK--SGVGNVFIKNLDKSIDNKA 641
F+Q A RA DT+N ++ + I + +++R +R+ + N DNKA
Sbjct: 431 AFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKA 490
Query: 642 LF 647
LF
Sbjct: 491 LF 492
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 285 LNSIKMN-PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSI 419
+N+ K++ PG +++YVG++ S +++ + + FS G V SI
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
+++V +L + TE L+ F GP+ ++ +D T RSLG ++ F+ D + L+
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
++L+V +L + L FS GP+ V + T + GY +V F DA+RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 510 TMNFDIIKGRPIRI 551
+ + GR +R+
Sbjct: 65 ELKNKKLHGRILRL 78
Score = 31.9 bits (69), Expect = 0.083
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 447 RSLGYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWS 560
R G+A+V + AE A++++N I GRPI + W+
Sbjct: 146 RMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.9 bits (84), Expect = 0.001
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Frame = +3
Query: 300 MNPGPPSYPM---ASLYVGDLHSDIT--EAMLFEKFSTAGPVLSIRVCRDMITRRSLGYA 464
+ P P S P +L+V +L +I L E FS G + S + T S GY
Sbjct: 406 VTPTPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 465 YVNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL 644
+V+F P +A +A++T+N + + + + ++++ RK + +F ++ + + +L
Sbjct: 466 FVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKRED-RKKRLSAIFSQSYPPVVPSPSL 524
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
+ V +H + TE + + F+ GPV ++ + D T GYA + + A++A+D
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 516 NFDII 530
N ++
Sbjct: 72 NLSLL 76
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 33.9 bits (74), Expect = 0.021
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 456 GYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGV 593
G A+ NF P +A+ + +N I GR +R+ W ++ P + V
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERV 319
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 32.7 bits (71), Expect = 0.048
Identities = 27/104 (25%), Positives = 45/104 (43%)
Frame = +3
Query: 321 YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAER 500
Y LYV ++ + E + F G V S+R+ + + GY + Q DAE
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQ--DAEN 811
Query: 501 ALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSID 632
AL + R + ++ S+ SL K+ V + + L KS +
Sbjct: 812 ALSAAGKQ-LGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFE 854
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 32.3 bits (70), Expect = 0.063
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 378 LFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPI 545
+F +FS G V + VC D + +G YV F+ A+ A+D +N RP+
Sbjct: 80 MFCEFSKYGEVEQLVVC-DNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPV 134
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 30.7 bits (66), Expect = 0.19
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 324 PMASLYVGDLHSDITEAMLFE----KFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 491
P +LY+ ++ I ML F + G V+ ++ + T R G A+V F +
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARK---TLRMRGQAFVVFDNLEN 80
Query: 492 AERALDTMNFDIIKGRPIRIMWSQ 563
A RAL + + G+P+ I +S+
Sbjct: 81 ASRALKDLQGYPLYGKPMMIQYSK 104
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
L++ +L E L F G + + + D T G+AY++F DA RA +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 516 NFDIIKGRPIRIM 554
+ +GR + ++
Sbjct: 385 DAKPFQGRLLHVL 397
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 30.3 bits (65), Expect = 0.25
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 324 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERA 503
P +L+VG+L S ++ + FS G V SIR M++ + A++NF A+
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIR----MLSHKH--SAFLNFDSVETAKHV 638
Query: 504 LDTMN 518
L+ +N
Sbjct: 639 LEELN 643
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 30.3 bits (65), Expect = 0.25
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSL-GYAYVNFQQPTDA-ERALD 509
+YVG L S I + L +FS G V ++ + ++ +AY+NF+ D ++
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCKS 66
Query: 510 TMNFDIIKGRPIRI 551
++ KG +RI
Sbjct: 67 YLSNATFKGSKLRI 80
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = +3
Query: 342 VGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNF 521
V +LH + E + F P+ I + D RS G V F+ DAE A T+
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVI-MNYDR-AGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 522 DIIKGRPIRIMWSQRDPSL 578
+KG I+I + PSL
Sbjct: 147 TNLKGSEIQIS-KKSPPSL 164
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 345 GDLHSDITEAMLFEKFSTAGPVLSIRV-CRDMITRRS 452
G H+++ LF+K TA PVL R+ +D RRS
Sbjct: 610 GKEHANLALDTLFKKLPTAAPVLLKRIKTKDQEWRRS 646
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 593 NSGFAQGRITLGPHDSNGSSFDNIKVHG 510
N +A GR+T D NG DN + G
Sbjct: 135 NDDYALGRLTKDQKDENGDKVDNDLLEG 162
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/78 (25%), Positives = 40/78 (51%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
++++G+L + ITE + E GP+ I++ +T R++ A+V+F A +A+
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQIKI----VTERNI--AFVHFLNIAAAIKAVQE 260
Query: 513 MNFDIIKGRPIRIMWSQR 566
+ P+ WS+R
Sbjct: 261 L--------PLNPKWSKR 270
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +3
Query: 291 SIKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFST 398
S+ +P PP +P++ + D+ +D+ + L+E + +
Sbjct: 26 SLGADPLPPVHPLSLKNLVDIDTDLISSQLYELYDS 61
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 523 ILSKEDPLESCGPNVILPCA 582
+LS+ +PL C PN++L A
Sbjct: 496 VLSRLNPLRYCSPNIVLQFA 515
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 489 DAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDK 623
+ AL + N+DI+ + I SQRD ++ G V+ + K
Sbjct: 309 EVSAALASGNYDIVSSKKSTIEQSQRDMRKKEEAEGAVWARRYFK 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,380
Number of Sequences: 5004
Number of extensions: 48221
Number of successful extensions: 150
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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