Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_D19
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 193 1e-49
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 193 1e-49
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 192 1e-49
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 192 1e-49
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 178 2e-45
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 101 3e-22
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 77 1e-14
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 77 1e-14
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 61 6e-10
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 61 6e-10
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 61 6e-10
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 61 6e-10
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 61 8e-10
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 58 5e-09
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 55 5e-08
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 54 1e-07
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 51 8e-07
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 51 8e-07
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 48 4e-06
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 48 6e-06
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 48 6e-06
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 48 6e-06
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 45 4e-05
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 44 7e-05
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 44 9e-05
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 44 9e-05
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 44 9e-05
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 41 9e-04
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 41 9e-04
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 40 0.002
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 40 0.002
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 39 0.003
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 39 0.003
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 38 0.006
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 38 0.008
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 38 0.008
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 38 0.008
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 37 0.011
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 37 0.014
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 37 0.014
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 37 0.014
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 36 0.033
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.033
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.033
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 35 0.044
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 33 0.13
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 33 0.18
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 33 0.18
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 32 0.31
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 32 0.31
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 31 0.54
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 31 0.54
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 31 0.71
Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical pr... 30 1.2
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 30 1.2
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 1.6
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 1.6
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 1.6
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 1.6
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 29 2.9
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 29 2.9
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 28 5.0
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 28 6.7
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 28 6.7
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 28 6.7
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 27 8.8
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 193 bits (470), Expect = 1e-49
Identities = 85/112 (75%), Positives = 100/112 (89%)
Frame = +3
Query: 318 SYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE 497
SY MASLYVGDLH D+ E++LFEKFS AGPVLSIRVCRD TR SLGYAYVNFQQP DAE
Sbjct: 28 SYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
Query: 498 RALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDT 653
RA+DTMNF+ + G+P+RIMWSQRDP++R+SG GN+FIKNLDK IDNK+++DT
Sbjct: 88 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDT 139
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 193 bits (470), Expect = 1e-49
Identities = 85/112 (75%), Positives = 100/112 (89%)
Frame = +3
Query: 318 SYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE 497
SY MASLYVGDLH D+ E++LFEKFS AGPVLSIRVCRD TR SLGYAYVNFQQP DAE
Sbjct: 28 SYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
Query: 498 RALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDT 653
RA+DTMNF+ + G+P+RIMWSQRDP++R+SG GN+FIKNLDK IDNK+++DT
Sbjct: 88 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDT 139
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 192 bits (469), Expect = 1e-49
Identities = 86/116 (74%), Positives = 102/116 (87%)
Frame = +3
Query: 306 PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP 485
P +Y MASLY+GDLH D++EAMLFEKFS AGPVLSIRVCRD +R SLGYAYVNFQQP
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 486 TDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDT 653
DAERALDTMNF++I GRP+RIMWSQRDP+ R++G GN+FIKNLD+ IDNK+++DT
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDT 164
Score = 44.8 bits (101), Expect = 5e-05
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
++++ +L I +++ FS G +LS +V D S GY +V+F+ A+ A++
Sbjct: 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEK 204
Query: 513 MNFDIIKGRPIRI----MWSQRDPSLRKSGVG--NVFIKNLDKSIDNKAL 644
+N ++ + + + +QR L +SG+ NVF+KN + +D + L
Sbjct: 205 VNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKL 254
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 192 bits (469), Expect = 1e-49
Identities = 86/116 (74%), Positives = 102/116 (87%)
Frame = +3
Query: 306 PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP 485
P +Y MASLY+GDLH D++EAMLFEKFS AGPVLSIRVCRD +R SLGYAYVNFQQP
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 486 TDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDT 653
DAERALDTMNF++I GRP+RIMWSQRDP+ R++G GN+FIKNLD+ IDNK+++DT
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDT 164
Score = 44.8 bits (101), Expect = 5e-05
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
++++ +L I +++ FS G +LS +V D S GY +V+F+ A+ A++
Sbjct: 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEK 204
Query: 513 MNFDIIKGRPIRI----MWSQRDPSLRKSGVG--NVFIKNLDKSIDNKAL 644
+N ++ + + + +QR L +SG+ NVF+KN + +D + L
Sbjct: 205 VNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKL 254
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 178 bits (434), Expect = 2e-45
Identities = 79/102 (77%), Positives = 91/102 (89%)
Frame = +3
Query: 318 SYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE 497
SY MASLYVGDLH D+ E++LFEKFS AGPVLSIRVCRD TR SLGYAYVNFQQP DAE
Sbjct: 28 SYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
Query: 498 RALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDK 623
RA+DTMNF+ + G+P+RIMWSQRDP++R+SG GN+FIKNLDK
Sbjct: 88 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDK 129
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 101 bits (243), Expect = 3e-22
Identities = 41/58 (70%), Positives = 53/58 (91%)
Frame = +3
Query: 480 QPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDT 653
QP DAERA+DTMNF+ + G+P+RIMWSQRDP++R+SG GN+FIKNLDK IDNK+++DT
Sbjct: 19 QPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDT 76
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
A++YVG L ++E++L+E AGPV+S+ + +D +T G+ +V F DA+ A+
Sbjct: 13 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 72
Query: 510 TMNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALFDT 653
+N + G+PI++ ++ + VG N+F+ NLD +D K L+DT
Sbjct: 73 ILNMIKLYGKPIKV--NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDT 119
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSI-RVCRDMITRRSLGYAYVNFQQPTDAERAL 506
A+++VG+L ++ E +L++ FS G +L + ++ RD+ + S G+A++NF ++ AL
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 507 DTMNFDIIKGRPIRIMWS-QRDPSLRKSG 590
+ MN + R I + ++ +RD + G
Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSKGERHG 188
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
A++YVG L ++E++L+E AGPV+S+ + +D +T G+ +V F DA+ A+
Sbjct: 23 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 82
Query: 510 TMNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALFDT 653
+N + G+PI++ ++ + VG N+F+ NLD +D K L+DT
Sbjct: 83 ILNMIKLYGKPIKV--NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDT 129
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSI-RVCRDMITRRSLGYAYVNFQQPTDAERAL 506
A+++VG+L ++ E +L++ FS G +L + ++ RD+ + S G+A++NF ++ AL
Sbjct: 110 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 169
Query: 507 DTMNFDIIKGRPIRIMWS-QRDPSLRKSG 590
+ MN + R I + ++ +RD + G
Sbjct: 170 EAMNGQFLCNRAITVSYAFKRDSKGERHG 198
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 516 NFDIIKGRPIRIMWSQRDP 572
N + R IR W+ R P
Sbjct: 84 NGQWLGRRTIRTNWATRKP 102
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/77 (28%), Positives = 41/77 (53%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
S+YVG++ S +TE + + F++ G + +R+ + GYA+V F A +A+
Sbjct: 129 SVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQ 181
Query: 513 MNFDIIKGRPIRIMWSQ 563
MN + G+ +R W +
Sbjct: 182 MNNQDVGGQLVRCSWGK 198
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 516 NFDIIKGRPIRIMWSQRDP 572
N + R IR W+ R P
Sbjct: 94 NGQWLGRRTIRTNWATRKP 112
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/77 (28%), Positives = 41/77 (53%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
S+YVG++ S +TE + + F++ G + +R+ + GYA+V F A +A+
Sbjct: 139 SVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQ 191
Query: 513 MNFDIIKGRPIRIMWSQ 563
MN + G+ +R W +
Sbjct: 192 MNNQDVGGQLVRCSWGK 208
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 516 NFDIIKGRPIRIMWSQRDP 572
N + R IR W+ R P
Sbjct: 197 NGQWLGRRTIRTNWATRKP 215
Score = 50.8 bits (116), Expect = 8e-07
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
+LYVG+L S +TE + F+ G V +V D + YA+V F A +AL T
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQT 103
Query: 513 MNFDIIKGRPIRIMWSQRDPSLRKSGVG-----NVFIKNLDKSIDNKAL 644
MN ++ R +++ W+ +P ++S + +VF+ +L +DN+ L
Sbjct: 104 MNKRLLLDREMKVNWAV-EPGQQQSKIDTTRHFHVFVGDLSSEVDNQKL 151
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/77 (28%), Positives = 41/77 (53%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
S+YVG++ S +TE + + F++ G + +R+ + GYA+V F A +A+
Sbjct: 242 SVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQ 294
Query: 513 MNFDIIKGRPIRIMWSQ 563
MN + G+ +R W +
Sbjct: 295 MNNQDVGGQLVRCSWGK 311
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 516 NFDIIKGRPIRIMWSQRDP 572
N + R IR W+ R P
Sbjct: 165 NGQWLGRRTIRTNWATRKP 183
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/77 (28%), Positives = 41/77 (53%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
S+YVG++ S +TE + + F++ G + +R+ + GYA+V F A +A+
Sbjct: 210 SVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQ 262
Query: 513 MNFDIIKGRPIRIMWSQ 563
MN + G+ +R W +
Sbjct: 263 MNNQDVGGQLVRCSWGK 279
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VGDL S+I L E F G V ++ RD T + GY +V++ + DAERA+D M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 516 NFDIIKGRPIRIMWSQRDP 572
N + R IR W+ R P
Sbjct: 194 NGAWLGRRTIRTNWATRKP 212
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
S+YVG++ +++ E + F GP+ +R T + GYA+V F+ A RA+
Sbjct: 257 SVYVGNI-ANLGEDEIRRAFDRFGPINEVR------TFKIQGYAFVKFETKESAARAIVQ 309
Query: 513 MNFDIIKGRPIRIMWSQR----DPSLRKSGVG 596
MN I G+ +R W + PS R SG G
Sbjct: 310 MNNADIGGQIVRCSWGKSGDSGKPSERGSGGG 341
Score = 31.1 bits (67), Expect = 0.71
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
+L+V +L IT+ L F+ G V+ ++ + + YA+V F A AL +
Sbjct: 41 TLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP---YAFVEFSDHNQATLALQS 97
Query: 513 MNFDIIKGRPIRIMWS--QRDPSLRKSGVG-----NVFIKNLDKSIDNKAL 644
N + + + + W+ R+P +S +VF+ +L ID+ L
Sbjct: 98 HNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKL 148
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 58.0 bits (134), Expect = 5e-09
Identities = 29/80 (36%), Positives = 45/80 (56%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VGDL D++ +L F+ G V +V RD+ T++S GY +V+F +AE A+ M
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 516 NFDIIKGRPIRIMWSQRDPS 575
N I R +R W+ R S
Sbjct: 197 NGKWIGKRAVRTNWAARKNS 216
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/77 (31%), Positives = 43/77 (55%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
S+YVG++ T+A L + FST G + +R+ + T+R YA+V +++ A +A+
Sbjct: 238 SVYVGNISQQTTDADLRDLFSTYGDIAEVRIFK---TQR---YAFVRYEKKECATKAIME 291
Query: 513 MNFDIIKGRPIRIMWSQ 563
MN + G +R W +
Sbjct: 292 MNGKEMAGNQVRCSWGR 308
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/96 (30%), Positives = 48/96 (50%)
Frame = +3
Query: 300 MNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ 479
MN P +LYVG D+TE +L F G V++I + D + + G+ +V F
Sbjct: 1 MNTNFPHNRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFD 60
Query: 480 QPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRKS 587
DA A+D MN + G+ IR+ +++ + +S
Sbjct: 61 MAEDAAMAIDNMNESELFGKTIRVNFARPPKATERS 96
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
S+YVG+ TE L FS+ G + ++R+ D T R G+A++ F + A+RA++
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 513 MNFDIIKGRPIRI 551
MN GRP+R+
Sbjct: 66 MNGAEFNGRPLRV 78
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 50.8 bits (116), Expect = 8e-07
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 327 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 506
+ SL + +L T L F G + + + RD +R+S G+ +V F + DAE AL
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHAL 77
Query: 507 DTMNFDIIKGRPIRIMWSQRD-PSLRKSGVG 596
D + ++ GR +R+ ++ D PS + G G
Sbjct: 78 DRTDGKLVDGRELRVTLAKYDRPSDERGGRG 108
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 50.8 bits (116), Expect = 8e-07
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 327 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 506
+ SL + +L T L F G + + + RD +R+S G+ +V F + DAE AL
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHAL 77
Query: 507 DTMNFDIIKGRPIRIMWSQRD-PSLRKSGVG 596
D + ++ GR +R+ ++ D PS + G G
Sbjct: 78 DRTDGKLVDGRELRVTLAKYDRPSDERGGRG 108
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/99 (26%), Positives = 57/99 (57%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
+L + L +T+ + F++ G + S ++ RD +T +SLGY +VN+ + DA RA+ +
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 513 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 629
N ++ + I++ +++ PS + N+++ + KS+
Sbjct: 103 FNGLRLQNKTIKVSYAR--PSNDQIKGSNLYVSGIPKSM 139
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
S++VG++ D++E + FS AG VLSI++ D T + GY ++ F AE A+
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 513 MNFDIIKGRPIRI 551
+N + GR +R+
Sbjct: 79 LNGYELSGRILRV 91
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTA-GPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
+++VG+L +ITE L FS GPV ++R+ RD T + G+A+VNF+Q + AL
Sbjct: 247 AIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLALS 306
Query: 510 TMNFDIIKGRPIRI 551
+ K R +RI
Sbjct: 307 METIKMEK-RDLRI 319
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +3
Query: 327 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 506
M+ +YVG + +I E ML F GP+ SI + D T +A+V ++ P A A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 507 DTMNFDIIKGRPIRI 551
++MN ++ GR +++
Sbjct: 161 ESMNGQMLGGRNLKV 175
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
+YV +H D++E L F G ++ ++ R R G+ Y+ F T A+ M
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 516 NFDIIKGRPIR 548
N + G+ +R
Sbjct: 269 NMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +3
Query: 327 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 506
M+ +YVG + +I E ML F GP+ SI + D T +A+V ++ P A A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 507 DTMNFDIIKGRPIRI 551
++MN ++ GR +++
Sbjct: 161 ESMNGQMLGGRNLKV 175
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
+YV +H D++E L F G ++ ++ R R G+ Y+ F T A+ M
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 516 NFDIIKGRPIRI 551
N + G+ +R+
Sbjct: 269 NMFDLGGQYLRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +3
Query: 327 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 506
M+ +YVG + +I E ML F GP+ SI + D T +A+V ++ P A A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 507 DTMNFDIIKGRPIRI 551
++MN ++ GR +++
Sbjct: 161 ESMNGQMLGGRNLKV 175
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
+YV +H D++E L F G ++ ++ R R G+ Y+ F T A+ M
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 516 NFDIIKGRPIRI 551
N + G+ +R+
Sbjct: 269 NMFDLGGQYLRV 280
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +3
Query: 318 SYPMAS--LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 491
S P++S LY+ L + + +L E S G + S + D T GY +V+F+ P
Sbjct: 75 STPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQA 134
Query: 492 AERALDTMNFDIIKGRPIRIMWSQRDPS 575
A A+D +N + ++ + ++ ++DP+
Sbjct: 135 AAAAVDGLNTEGVQAQMAKLQQQEQDPT 162
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/81 (25%), Positives = 42/81 (51%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
+LY+ L + + +L E S G + S + D T GY +V+F+ P A A+D
Sbjct: 108 NLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG 167
Query: 513 MNFDIIKGRPIRIMWSQRDPS 575
+N + ++ + ++ ++DP+
Sbjct: 168 LNTEGVQAQMAKLQQQEQDPT 188
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++ GDL +++++ +L + F +V R+ T +S GY +V+F+ D RA+ M
Sbjct: 205 VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREM 264
Query: 516 NFDIIKGRPIRI---MWSQRD 569
+ + RPI++ W +R+
Sbjct: 265 DGKYVGNRPIKLRKSAWKERN 285
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++V ++H + TE + +KFS G + +I + D T GYA V ++ +A A+D
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 516 NFDIIKGRPIRIMW 557
N + G+ +++ W
Sbjct: 117 NDTDLLGQNVKVDW 130
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 327 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 506
+ ++VG L S+ T+ ++ E +S G + I V RD T+RS G+ +V F T+ + A+
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 327 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 506
+ ++VG L S+ T+ ++ E +S G + I V RD T+RS G+ +V F T+ + A+
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 327 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 506
+ ++VG L S+ T+ ++ E +S G + I V RD T+RS G+ +V F T+ + A+
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +3
Query: 312 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 491
PP + L++G L D T+ L FS GPV+ V RD T+ S G+ +V F
Sbjct: 45 PPQ--LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 102
Query: 492 AERALD 509
AE A++
Sbjct: 103 AESAMN 108
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +3
Query: 312 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 491
PP + L++G L D T+ L FS GPV+ V RD T+ S G+ +V F
Sbjct: 65 PPQ--LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 122
Query: 492 AERALD 509
AE A++
Sbjct: 123 AESAMN 128
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +3
Query: 312 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 491
PP + L++G L D T+ L FS GPV+ V RD T+ S G+ +V F
Sbjct: 66 PPQ--LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 123
Query: 492 AERALD 509
AE A++
Sbjct: 124 AESAMN 129
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +3
Query: 342 VGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNF 521
V +L ++ E L + F G V+ I + RD +T G+A+V F+ DA RA+ +N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 522 DIIKGRPIRIMWSQ 563
+ +++ W++
Sbjct: 240 IRMYHMVLKVEWTR 253
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
A +Y+G L ++E + FS G V++I + RD T +S G+A++ ++ A+D
Sbjct: 38 AWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVD 97
Query: 510 TMNFDIIKGRPIRI 551
N + R IR+
Sbjct: 98 NFNGISLHKRMIRV 111
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
L+V ++ E L F GPV+ + + + R S G+ +V Q P DA+RA
Sbjct: 102 LHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFN--ERGSKGFGFVTMQNPDDADRARAEF 159
Query: 516 NFDIIKGRPIRI 551
N I+GR + +
Sbjct: 160 NGTTIEGRRVEV 171
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
L+V ++ E L F GPV+ + + + R S G+ +V Q P DA+RA
Sbjct: 102 LHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFN--ERGSKGFGFVTMQNPDDADRARAEF 159
Query: 516 NFDIIKGRPIRI 551
N I+GR + +
Sbjct: 160 NGTTIEGRRVEV 171
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Frame = +3
Query: 276 EIVLNSIKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSL 455
E LN+ + S +++G L T L + F G V V RD T+R+
Sbjct: 27 EARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRAR 86
Query: 456 GYAYVNFQQPTDAERALDTMNFDIIKGRPI--RIMWSQRDPSLRKSGVGNVFIKNLDKSI 629
G+ ++ F P+ ++ L+ + + G+ I ++ + +R + + VFI L +
Sbjct: 87 GFGFITFVDPSSVDKVLNNREHE-LDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATS 145
Query: 630 ---DNKALFDT 653
D K F+T
Sbjct: 146 TLEDMKQYFET 156
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Frame = +3
Query: 276 EIVLNSIKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSL 455
E LN+ + S +++G L T L + F G V V RD T+R+
Sbjct: 27 EARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRAR 86
Query: 456 GYAYVNFQQPTDAERALDTMNFDIIKGRPI--RIMWSQRDPSLRKSGVGNVFIKNLDKSI 629
G+ ++ F P+ ++ L+ + + G+ I ++ + +R + + VFI L +
Sbjct: 87 GFGFITFVDPSSVDKVLNNREHE-LDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATS 145
Query: 630 ---DNKALFDT 653
D K F+T
Sbjct: 146 TLEDMKQYFET 156
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +3
Query: 294 IKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVN 473
IK P PP ++YV + ++ E +L E F AGPV+ + + RD + + +A V
Sbjct: 3 IKPTPSPPEE--RTIYVANFSEEVDEELLEELFIQAGPVVKV-ILRD-VRDSNAKFALVE 58
Query: 474 FQQPTDAERALDTMN 518
F+ A++ MN
Sbjct: 59 FEDELSVLFAIELMN 73
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 37.5 bits (83), Expect = 0.008
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE---R 500
A +YVG L SD T L E F G R+ + + RR G+A+V + DAE R
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFG-----RIRKVWVARRPPGFAFVEYDDVRDAEDAVR 57
Query: 501 ALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL 644
ALD ++ R +R R G G D+ ++N +
Sbjct: 58 ALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDRLVENNLI 105
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 342 VGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNF 521
V +LH I E M+ + F + G + I + D R + G+A + F+ DA+++ + +N
Sbjct: 131 VENLHPKIDEKMIRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADDAQKSCEQLNN 189
Query: 522 DIIKGRPIRIMWSQRD--PSLRK 584
+ GR IR+ Q P+++K
Sbjct: 190 FELAGRCIRLSIKQESQAPAVKK 212
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 342 VGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNF 521
V +LH I E M+ + F + G + I + D R + G+A + F+ DA+++ + +N
Sbjct: 276 VENLHPKIDEKMIRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADDAQKSCEQLNN 334
Query: 522 DIIKGRPIRIMWSQRD--PSLRK 584
+ GR IR+ Q P+++K
Sbjct: 335 FELAGRCIRLSIKQESQAPAVKK 357
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VG L ++ L E F G + V D T++S GY +V + AERA
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDP 96
Query: 516 NFDIIKGRPIRI 551
N II GR +
Sbjct: 97 N-PIIDGRKANV 107
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 390 FSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPIRI 551
F GPV+ + + + R S G+ +V Q P DA+RA N I+GR + +
Sbjct: 2 FEKVGPVVDVEIIFN--ERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 53
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
A +YVG L SD T L E F G R+ + + RR G+A+V + DAE A+
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFG-----RIRKVWVARRPPGFAFVEYDDVRDAEDAVR 57
Query: 510 TMNFDIIKGRPIRI 551
++ I G R+
Sbjct: 58 ALDGSRICGVRARV 71
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +3
Query: 330 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 509
A +YVG L SD T L E F G R+ + + RR G+A+V + DAE A+
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFG-----RIRKVWVARRPPGFAFVEYDDVRDAEDAVR 57
Query: 510 TMNFDIIKGRPIRI 551
++ I G R+
Sbjct: 58 ALDGSRICGVRARV 71
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +3
Query: 369 EAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMN 518
E L F G VL IRV R+ T G+AYV F AE A ++MN
Sbjct: 45 EKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMN 94
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 378 LFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPIRI 551
+FEKF G V + + + R S G+ +V ++P DAERA ++ +I+GR I +
Sbjct: 172 MFEKF---GVVSDVEIIFN--ERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 378 LFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPIRI 551
+FEKF G V + + + R S G+ +V ++P DAERA ++ +I+GR I +
Sbjct: 172 MFEKF---GVVSDVEIIFN--ERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 35.1 bits (77), Expect = 0.044
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +3
Query: 360 DITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGR 539
D E + E G V I VC + I +G YV F + DAE+A + +N G+
Sbjct: 89 DFYEEVFVEMERKYGEVEEINVCEN-IGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQ 147
Query: 540 PI 545
PI
Sbjct: 148 PI 149
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVC---RDMITRRSLGYAYVNFQQPTDAERA 503
++YV ++ +TE L F + GP+ ++++ + RR A+V F D +R
Sbjct: 201 NVYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRSEEERRRPHICAFVAFMSRADVDRF 260
Query: 504 LDTMNFDIIKGRPIRIMWSQ 563
+ + I++ PIR +++
Sbjct: 261 MAEVRVIIVRNEPIRFAFAR 280
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE---RAL 506
+YVG+L D+ E + + F G + + D+ + R +A+V F+ DAE RA
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 507 DTMNFDIIKGRPIRIMWSQ 563
D FD GR IR+ +++
Sbjct: 67 DGYEFD---GRRIRVEFTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE---RAL 506
+YVG+L D+ E + + F G + + D+ + R +A+V F+ DAE RA
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 507 DTMNFDIIKGRPIRIMWSQ 563
D FD GR IR+ +++
Sbjct: 67 DGYEFD---GRRIRVEFTR 82
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VG + ++ L F+ G V +V D RS G+A+V F + AL
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 516 NFDIIKGRPIRI 551
IKG+ + +
Sbjct: 91 E-QTIKGKSVEV 101
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
++VG + ++ L F+ G V +V D RS G+A+V F + AL
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 516 NFDIIKGRPIRI 551
IKG+ + +
Sbjct: 91 E-QTIKGKSVEV 101
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/91 (25%), Positives = 40/91 (43%)
Frame = +3
Query: 312 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 491
P S+ +YV ++ E L F G VLS+ + + R S G+ +V
Sbjct: 45 PASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN--DRGSKGFGFVTLDSIES 102
Query: 492 AERALDTMNFDIIKGRPIRIMWSQRDPSLRK 584
E+A ++ ++GR I + + P+ RK
Sbjct: 103 CEKARAALHESHVQGRIIEV--RRATPTRRK 131
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/91 (25%), Positives = 40/91 (43%)
Frame = +3
Query: 312 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 491
P S+ +YV ++ E L F G VLS+ + + R S G+ +V
Sbjct: 45 PASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN--DRGSKGFGFVTLDSIES 102
Query: 492 AERALDTMNFDIIKGRPIRIMWSQRDPSLRK 584
E+A ++ ++GR I + + P+ RK
Sbjct: 103 CEKARAALHESHVQGRIIEV--RRATPTRRK 131
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
LY+ +L IT ++E F G V IRV TR G A+V ++ DA+ A + +
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETR---GTAFVVYEDIFDAKTACEHL 77
Query: 516 NFDIIKGRPIRIMWSQ 563
+ + R + +++ Q
Sbjct: 78 SGYNVSNRYLVVLYYQ 93
>Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical
protein B0035.6 protein.
Length = 727
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 310 VHQVIRWHLCMLEIYTLI*PRPCCLKNFRLLG 405
V + +RWHL + TL+ CLKNF + G
Sbjct: 153 VQEELRWHLLFSPVTTLLDIFTRCLKNFEITG 184
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 324 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRR-SLGYAYVNFQQPTDAER 500
P + + +L ++ + L E FS G + ++ + D GY YV + DAE+
Sbjct: 131 PAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEK 190
Query: 501 ALDTMNFDIIKGRPIRI 551
++ M+ I G + +
Sbjct: 191 SIKHMDGGQIDGMAVHV 207
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
+++G L + +TE + E + GP+ + + D S GYA+ + PT ++A+ +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 516 N 518
N
Sbjct: 352 N 352
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
+++G L + +TE + E + GP+ + + D S GYA+ + PT ++A+ +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 516 N 518
N
Sbjct: 352 N 352
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
+++G L + +TE + E + GP+ + + D S GYA+ + PT ++A+ +
Sbjct: 268 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 516 N 518
N
Sbjct: 327 N 327
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 336 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 515
+++G L + +TE + E + GP+ + + D S GYA+ + PT ++A+ +
Sbjct: 271 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 516 N 518
N
Sbjct: 330 N 330
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 378 LFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPIRIM 554
LF+K+ G V ++V D T G+A V F P A A ++ + KGR + I+
Sbjct: 298 LFKKY---GEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHIL 353
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 303 NPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPV 410
+P P+ P ++V +LH +TEA L E S GPV
Sbjct: 24 DPTNPN-PSIVVHVRNLHQKVTEADLLEALSNFGPV 58
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 303 NPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPV 410
+P P+ P ++V +LH +TEA L E S GPV
Sbjct: 24 DPTNPN-PSIVVHVRNLHQKVTEADLLEALSNFGPV 58
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ 479
+LYVG+L S +TE + F+ G V +V D LGY N Q
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----ELGYLATNAQ 90
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +3
Query: 285 LNSIKMNPGPPSYPMASL---YVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSL 455
+N K P P M+++ +V + D+ + L++ F G + C +
Sbjct: 78 VNFAKKEPKPAENVMSNISNVFVRGISRDMPDTELYQAFG--GITDGVVQCHV-----AD 130
Query: 456 GYAYVNFQQPTDAERALDTMNFDIIKGRPIRIMWSQRDPSLRK 584
GY +V F +A++ + M+ + G+ I + W++ D RK
Sbjct: 131 GYGFVLFDTRANAQKKIVEMDGKTLNGKLISVSWARPDTVGRK 173
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
protein F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 427 QTRIDRTGPAVENFSNNMASVISECKSPTYRD 332
Q+RI + SN M+SVI +SPT+RD
Sbjct: 845 QSRIVMADDDDSSESNPMSSVIDRSRSPTFRD 876
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 27.9 bits (59), Expect = 6.7
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
+L+VG++ SD+ E + F G V + + + T YA+V FQ A +A
Sbjct: 170 TLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINT--DAAYAFVMFQTVDQAIQAKAE 227
Query: 513 MNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAL 644
+ RPIR S+ KS V +F+ L D + L
Sbjct: 228 E-----QDRPIRAGGSRMKIGYGKSQVSRRLFVGGLGSWCDKEIL 267
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 27.9 bits (59), Expect = 6.7
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
+L+VG++ SD+ E + F G V + + + T YA+V FQ A +A
Sbjct: 170 TLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINT--DAAYAFVMFQTVDQAIQAKAE 227
Query: 513 MNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAL 644
+ RPIR S+ KS V +F+ L D + L
Sbjct: 228 E-----QDRPIRAGGSRMKIGYGKSQVSRRLFVGGLGSWCDKEIL 267
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 27.9 bits (59), Expect = 6.7
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = +3
Query: 333 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 512
+L+VG++ SD+ E + F G V + + + T YA+V FQ A +A
Sbjct: 147 TLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINT--DAAYAFVMFQTVDQAIQAKAE 204
Query: 513 MNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKAL 644
+ RPIR S+ KS V +F+ L D + L
Sbjct: 205 E-----QDRPIRAGGSRMKIGYGKSQVSRRLFVGGLGSWCDKEIL 244
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 444 RRSLGYAYVNFQQPTDAERALDTMN 518
R YAYV F+ P DA++A++ ++
Sbjct: 60 RHMSDYAYVTFETPEDAQKAINLVD 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,313
Number of Sequences: 27780
Number of extensions: 269966
Number of successful extensions: 663
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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