Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_D12
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 27 1.1
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 1.4
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 1.8
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom... 26 2.4
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 3.2
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 4.3
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 25 5.6
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 24 7.4
SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa... 24 7.4
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 24 7.4
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 24 7.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 9.8
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 24 9.8
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 24 9.8
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 24 9.8
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.8
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 159 EVKKCLENPHVREILELLDSSANPDELV 242
E K +E+ V EILEL++ S NP LV
Sbjct: 195 ENNKEIEHEVVSEILELIEKSKNPSILV 222
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 284 INKFCEYGFLHIFLN*LIRICRRIK 210
INKF + +FL L+R+CR++K
Sbjct: 17 INKFSSFESNWLFLLFLVRVCRQLK 41
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 141 LIKRVYSYFHNIFLAYFLSVTYLFRLFGYILCA*FGFIFCY 19
L+K ++ FH IFL Y S ++L +F + +FC+
Sbjct: 1005 LLKLPWAVFH-IFLRYLFSHSFLVIIFACSVILNLSLMFCF 1044
>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 25.8 bits (54), Expect = 2.4
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 138 LSDKNSTEVKKCLE---NPHVREILELLDSSANPDELVQEYMQEPI 266
L ++TEV K + N +RE+LEL++S A+ D + +Y E +
Sbjct: 38 LYQASTTEVLKAQKAGYNQALREVLELIESGASID-FISQYCLEKL 82
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.4 bits (53), Expect = 3.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -3
Query: 85 CYIFISVIRVYFMCLIRFYFLLLYCI 8
CY + +++ Y + +I +Y+ LL C+
Sbjct: 52 CYDYKNILLKYELFIIYYYYYLLICL 77
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 171 CLENPHVREILELLDSSANPDELVQEYMQEPI 266
C +P ++ LEL + + P ELV + EPI
Sbjct: 186 CGYHPRLKVALELPPACSPPIELVNRWYAEPI 217
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 80 HIYFGYSGIFYVPNSVLFFV 21
H++ Y IFY+P+ L FV
Sbjct: 315 HVHNVYQHIFYIPDPTLAFV 334
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 111 NIFLAYFLSVTYLFRLFGYI 52
+IFLA+F+ +T++F +I
Sbjct: 710 SIFLAWFIGITFMFEFAVFI 729
>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
L22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 334 SVYENLLCEKIKVDNKTG 387
+ +E L ++IKVD KTG
Sbjct: 28 AAFEKYLIDRIKVDGKTG 45
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 177 ENPHVREILELLDSSANPD 233
ENP+V + + +D S NPD
Sbjct: 370 ENPYVDVVPKAMDESENPD 388
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 367 LFFHTINSHRHYI*FHDIIES*TTFKHASTNSV 269
+F+H I++ H F D+I T F S+ S+
Sbjct: 91 IFYHCIDALEHPNNFFDVIILQTVFSEISSKSI 123
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 120 YFHNIFLAYFLSVTYLFRLFGYILC 46
+ IF+ YF S L LF + LC
Sbjct: 138 FLSQIFIVYFSSFPILHFLFFFFLC 162
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 86 VLHIYFGYSGIFYVPNSVLFFVIV 15
VL +Y +Y+PN+VL VI+
Sbjct: 471 VLALYCLTGAFYYIPNAVLSAVII 494
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 73 ISVIRVYFMCLIRFY 29
+SVIR++ CLIR +
Sbjct: 4 LSVIRIFIYCLIRLF 18
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 388 SRFCYRLLFFHTINS 344
SRF YRL+FF+ S
Sbjct: 277 SRFIYRLIFFYIFGS 291
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 156 TEVKKCLENPHVREILELLDSSANPDELVQE 248
TE+K P +R +ELL S + D L+ E
Sbjct: 341 TEIKIRDFTPTLRSAIELLTSGTHADRLLSE 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,739
Number of Sequences: 5004
Number of extensions: 27829
Number of successful extensions: 90
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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