Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_D12
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776...    29   1.8  
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164...    28   2.4  

>06_02_0133 +
           12176059-12176238,12177244-12177362,12177515-12177612,
           12177811-12177870,12177920-12177990,12178082-12178276,
           12178395-12178441,12178532-12178598,12178660-12178665,
           12178689-12178789,12179014-12179115,12179182-12179323,
           12179578-12179661,12179760-12180080
          Length = 530

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 195 LSHGDFLDIS*LLL-NFCHLIKRVYSYFHNIFLAYFLSVTYLFRLFGYILCA*FGFIFCY 19
           L+ G FLD+S +L+  FC ++   Y++ HN+  +  ++  ++F    +I      FIF Y
Sbjct: 277 LAEGKFLDLSGILMVFFCGIVMSHYAW-HNVTESSRITTRHIFATLSFIAET---FIFLY 332


>08_01_0207 -
           1647168-1647251,1647583-1647726,1648176-1648287,
           1648392-1648573,1648649-1648780,1648900-1649856,
           1649949-1650734
          Length = 798

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 156 TEVKKCLENPHVREILELLDSSANP-DELVQ 245
           +E+++C ENP V E+ + LDS  N  D LV+
Sbjct: 139 SELRQCRENPRVSELEKDLDSRKNEIDRLVR 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,011,218
Number of Sequences: 37544
Number of extensions: 129254
Number of successful extensions: 243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)