Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_D12
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.0  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           20   9.0  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 3   ITIQYNNKK*NRIRHIKYTRITE 71
           +T QY N + +  RHI +  +T+
Sbjct: 412 VTSQYKNIREDDARHIPHASVTD 434


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 213  DSSANPDELVQEYMQE 260
            +SS NPD+   EY+ E
Sbjct: 968  ESSCNPDQKPTEYLLE 983


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 82 YIFISVIRVYFMCL 41
          Y+F ++I   F+CL
Sbjct: 5  YVFTTLINAAFLCL 18


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 255 AYILELTHQDLQKNQAALIFLSHGDFL 175
           A ++ L    +Q  QAA +    GD+L
Sbjct: 95  AVVVSLYEDPIQPQQAASVVEKLGDYL 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,150
Number of Sequences: 438
Number of extensions: 1946
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)