Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_D08
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   7.2  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   9.5  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +1

Query: 376 NIFFIGYVLKLLENYFMF*LENDMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKF 555
           N+ FI  V  L++N       N +   ++   +S++   R+K     +  DC   R+R  
Sbjct: 582 NMEFISSVFSLIKNEVNDTSANSV--ILRTDALSNVATTRLKRKLTSAIIDCSIPRRRLR 639

Query: 556 THSEPRPAFVKRQRL 600
            +S P  A  K  RL
Sbjct: 640 HYSNPEIAEFKNFRL 654


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 449 RIICNTR**APSNEFE*NQTVYHPNSIVGQIENENSLIVNL 571
           R +CN      +N +   Q + HP SI+G     N+LI N+
Sbjct: 68  RELCNKTITVCTNHY---QVIGHPISIIGSNYERNALIFNM 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,751
Number of Sequences: 5004
Number of extensions: 46837
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)