Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_D08
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94...    28   7.5  
02_02_0229 + 8085357-8085435,8085673-8085758                           27   9.9  

>03_01_0121 +
           940338-940637,941023-941324,941417-941969,943889-944848
          Length = 704

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 405 IVGKLFHVLAGKRHGELYAIQD 470
           +VG+ FH  AG+ H E++A++D
Sbjct: 85  VVGEGFHPKAGQPHAEVFALRD 106


>02_02_0229 + 8085357-8085435,8085673-8085758
          Length = 54

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 441 RHGELYAIQDNELHQMNSNETKLFTIQIRLSGR 539
           R GE Y  Q   +H M + ETK++ + IR   R
Sbjct: 23  RKGESYT-QQQYMHSMENVETKMYDVDIRYDPR 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,686,361
Number of Sequences: 37544
Number of extensions: 233220
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)