Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_D07
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 93 2e-19
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 93 2e-19
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 3e-08
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 32 0.46
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.80
12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525 30 1.4
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 30 1.9
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 29 2.4
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 29 4.3
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539... 29 4.3
03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635 28 7.5
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 9.9
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 27 9.9
04_03_0916 + 20794240-20794246,20794585-20796545 27 9.9
02_03_0349 + 18010414-18014283 27 9.9
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/70 (61%), Positives = 56/70 (80%)
Frame = +3
Query: 138 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 317
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L ++GLI+ V H
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMVSVH 96
Query: 318 HGQVIYTRAT 347
Q IYTRAT
Sbjct: 97 CSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 92.7 bits (220), Expect = 2e-19
Identities = 43/70 (61%), Positives = 55/70 (78%)
Frame = +3
Query: 138 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 317
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L +GLI+ V H
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 96
Query: 318 HGQVIYTRAT 347
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3
Query: 138 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 242
+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3
Query: 243 VRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 347
+ GSLAR+A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 210 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 356
+TPAV E+ + + AR+ L + RE I+ +QH+ Q+++ +K D
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 29 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 154
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525
Length = 212
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 210 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 356
ITPAV E+ + + A++ L + RE+ I+ +Q + Q++Y +K D
Sbjct: 116 ITPAVYLEQHQFKLERAKQRLADRRERMDIEATIQANRQLVYEEKSKLD 164
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +3
Query: 207 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 356
++TPA E+ + + A++ L+E RE+ I+ +Q + Q+++ +K D
Sbjct: 167 VLTPAAYFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLD 216
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +3
Query: 207 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 356
+ITPA+ E+ + + A++ + + RE+ +I+ +Q + Q+++ K D
Sbjct: 237 IITPAIYLEQHQFKLEKAQQRIADRRERKVIEATIQANRQLVHEEKAKLD 286
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 2 EFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEE 109
E + A+E EG G K EEE R R R+ +EEE
Sbjct: 463 ELERKAEEEEEGGGGKGEKEREEEER-RQREKEEEE 497
>02_02_0584 -
11853149-11853573,11853673-11853787,11853868-11853981,
11854049-11854108,11854265-11854600,11854681-11854724,
11854776-11855507,11855736-11855921,11856012-11856153,
11856250-11856300
Length = 734
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 207 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 356
++TPAV E+ + + A+ L E RE+ I+ +Q + Q+++ +K D
Sbjct: 599 ILTPAVYLEQHQFKLKKAKLRLAERRERKDIEATIQANRQLVHEEKSKLD 648
>03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635
Length = 603
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 304 CLMRPFSLSSMSALLAREPRTFNL 233
C +RP S +++ AL+AR PR L
Sbjct: 217 CYVRPVSFAALEALVARSPRLTRL 240
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 35 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 151
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 126 LFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRPSWAASL 7
+F W S L R+R+L + F+A+ P + SWAA L
Sbjct: 65 VFTWNCMVSGLIRNRMLAEARKVFDAM-PVRNSVSWAALL 103
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 228 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 79
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 162 KPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRE 287
KPT E+L K +PQ K++ AV E + + L +LR+
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHIGDQSDALDAWLWQLRD 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,149
Number of Sequences: 37544
Number of extensions: 305059
Number of successful extensions: 850
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -