Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_D07
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   113   1e-25
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   2.2  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   8.8  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    27   8.8  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    27   8.8  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  113 bits (272), Expect = 1e-25
 Identities = 62/118 (52%), Positives = 70/118 (59%)
 Frame = +3

Query: 12  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKE 191
           MPPKKD K     P                            LNN VLFD+ TY+KLYKE
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57

Query: 192 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 365
           V  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K VV HHGQV+YTRATK  D +
Sbjct: 58  VITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 23  EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 124
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 277 SMSALLAREPRTFNLSDTTAGVISLYCG 194
           S++  ++ E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 286 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 149
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 286 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 149
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,500
Number of Sequences: 27780
Number of extensions: 279191
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)