Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_D03
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    87   6e-18
Z82268-2|CAD89737.1|  389|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z68750-2|CAA92967.2|  451|Caenorhabditis elegans Hypothetical pr...    28   4.2  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 87.0 bits (206), Expect = 6e-18
 Identities = 41/63 (65%), Positives = 47/63 (74%)
 Frame = +2

Query: 245 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPN 424
           LLGGKVHGSLARAGKV+ QTPKV+         GRA RR+QY RR+VNV    G++RGPN
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPN 127

Query: 425 SNS 433
           SNS
Sbjct: 128 SNS 130


>Z82268-2|CAD89737.1|  389|Caenorhabditis elegans Hypothetical
           protein F52B11.1b protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  CLVDKILQLCSCISEGNRHTSWTSMARSPLVRSR 119
           CL  K+ +LC  + + N H  WT+ A S ++  +
Sbjct: 287 CLFQKMYELCHEMHKLNAHAEWTTNALSIMMHKQ 320


>Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical
           protein F52B11.1a protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  CLVDKILQLCSCISEGNRHTSWTSMARSPLVRSR 119
           CL  K+ +LC  + + N H  WT+ A S ++  +
Sbjct: 406 CLFQKMYELCHEMHKLNAHAEWTTNALSIMMHKQ 439


>Z68750-2|CAA92967.2|  451|Caenorhabditis elegans Hypothetical
           protein K01A6.6 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   FLLVSAWLIRFYNYAV-AYQRAIDTRPGRQWPG 99
           F+ V+  ++RF+ +    YQ  +DT P  QW G
Sbjct: 209 FVCVTLAILRFFEHDTKVYQFCMDTEPTPQWAG 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,336,619
Number of Sequences: 27780
Number of extensions: 181140
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)