Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_C23
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0772 + 27970494-27972875                                         30   1.8  
05_01_0476 - 3896314-3898725                                           29   4.2  
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680     27   9.7  

>04_04_0772 + 27970494-27972875
          Length = 793

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 43  AFVRFRKQPNARFLVTGSIFILKQPVAA 126
           A++R    P A F+  G++F  K PVAA
Sbjct: 480 AYIRSTPSPTANFIFKGTVFKAKSPVAA 507


>05_01_0476 - 3896314-3898725
          Length = 803

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 510 NSMEIALHTRLKVLTSDTKKRKNKKIIVGVTGSIVIAVLAAFFV 641
           NS E  L+ RL      + ++ N+K IVGV   I+   +A+F V
Sbjct: 435 NSSEEVLYLRLSAKDVPSSRKNNRKTIVGV---IIATCIASFLV 475


>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
          Length = 936

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 388 LKYILYRCSELASNISAISVGIIPKSFLD 302
           L  IL RC +L S + AISV  I   ++D
Sbjct: 874 LNLILIRCPDLISILGAISVSEIESGYID 902


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,347,448
Number of Sequences: 37544
Number of extensions: 295838
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)