Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_C23
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical ... 30 1.2
Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein. 28 4.9
AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein. 28 4.9
AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte ... 28 4.9
AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte ... 28 4.9
AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte ... 28 4.9
L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promot... 27 8.6
>AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical
protein Y39C12A.6 protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -1
Query: 484 TACAIFEAY*SRYIKQSVIFLVF-FKANVLAIILKYILYRCSE 359
TACA+F Y S + + ++F+VF +L I+ Y++ + +E
Sbjct: 236 TACALFIQYDSSPLHREIMFVVFDLSFTLLCILAPYLILKTNE 278
>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical protein
W08D2.7 protein.
Length = 1026
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 300 LSRNDFGIIPTEIADILEASSEH-LYRIYLSIMANTLALKKTKNITDCLIYRDQYASNMA 476
L +D ++ +A L AS E L + L + NTL + +T + C +++D+ A A
Sbjct: 849 LGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALLSCFVFQDKCA---A 905
Query: 477 QAVLSELTTILNSM 518
+ +EL T L+ +
Sbjct: 906 PKLATELQTCLSEL 919
>AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein.
Length = 668
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -1
Query: 646 DCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLNTACAIF 467
D +N K IT+ + ++ +V+D ISIEF+ +SL T +IF
Sbjct: 365 DYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLFTLTSIF 424
Query: 466 EAY*SRYIKQSVI--FLVFFKANVLAIILK 383
+ + V+ F F + N+L + LK
Sbjct: 425 LGMGALLVYVGVLRYFGFFSQYNILMLTLK 454
>AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein.
Length = 611
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -1
Query: 646 DCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLNTACAIF 467
D +N K IT+ + ++ +V+D ISIEF+ +SL T +IF
Sbjct: 365 DYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLFTLTSIF 424
Query: 466 EAY*SRYIKQSVI--FLVFFKANVLAIILK 383
+ + V+ F F + N+L + LK
Sbjct: 425 LGMGALLVYVGVLRYFGFFSQYNILMLTLK 454
>AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform a protein.
Length = 611
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -1
Query: 646 DCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLNTACAIF 467
D +N K IT+ + ++ +V+D ISIEF+ +SL T +IF
Sbjct: 365 DYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLFTLTSIF 424
Query: 466 EAY*SRYIKQSVI--FLVFFKANVLAIILK 383
+ + V+ F F + N+L + LK
Sbjct: 425 LGMGALLVYVGVLRYFGFFSQYNILMLTLK 454
>AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform d protein.
Length = 668
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -1
Query: 646 DCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLNTACAIF 467
D +N K IT+ + ++ +V+D ISIEF+ +SL T +IF
Sbjct: 365 DYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLFTLTSIF 424
Query: 466 EAY*SRYIKQSVI--FLVFFKANVLAIILK 383
+ + V+ F F + N+L + LK
Sbjct: 425 LGMGALLVYVGVLRYFGFFSQYNILMLTLK 454
>AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform c protein.
Length = 619
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -1
Query: 646 DCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLNTACAIF 467
D +N K IT+ + ++ +V+D ISIEF+ +SL T +IF
Sbjct: 373 DYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLFTLTSIF 432
Query: 466 EAY*SRYIKQSVI--FLVFFKANVLAIILK 383
+ + V+ F F + N+L + LK
Sbjct: 433 LGMGALLVYVGVLRYFGFFSQYNILMLTLK 462
>L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promoting
complex; seealso mat protein 2 protein.
Length = 728
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 411 LKKTKNITDCLIYRDQYASNMAQAVLSELTTILNSME 521
+ K K + D LIY +YA N+ + + ++TT+L ++
Sbjct: 22 VSKKKEVWDALIYHAKYAKNIEK--VYDMTTVLQRVQ 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,150
Number of Sequences: 27780
Number of extensions: 305716
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -