Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_C19
         (345 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41515-1|AAA91179.1|   70|Homo sapiens DSS1 protein.                   69   4e-12
CR456887-1|CAG33168.1|   70|Homo sapiens SHFM1 protein.                69   4e-12
BC032782-1|AAH32782.1|   70|Homo sapiens split hand/foot malform...    69   4e-12
AC073230-1|AAQ93368.1|   70|Homo sapiens unknown protein.              69   4e-12
U97670-1|AAC78729.1|  258|Homo sapiens eukaryotic translation in...    30   2.2  
U05237-1|AAA97522.1|  810|Homo sapiens FAC1 protein.                   28   9.0  
AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger ...    28   9.0  
AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger ...    28   9.0  

>U41515-1|AAA91179.1|   70|Homo sapiens DSS1 protein.
          Length = 70

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 31/59 (52%), Positives = 38/59 (64%)
 Frame = +2

Query: 74  KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 250
           KQ VDLG           PAE+W   D +DED  VWEDNW+DD ++DDF+ QLR +LEK
Sbjct: 5   KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAELEK 62


>CR456887-1|CAG33168.1|   70|Homo sapiens SHFM1 protein.
          Length = 70

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 31/59 (52%), Positives = 38/59 (64%)
 Frame = +2

Query: 74  KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 250
           KQ VDLG           PAE+W   D +DED  VWEDNW+DD ++DDF+ QLR +LEK
Sbjct: 5   KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAELEK 62


>BC032782-1|AAH32782.1|   70|Homo sapiens split hand/foot
           malformation (ectrodactyly) type 1 protein.
          Length = 70

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 31/59 (52%), Positives = 38/59 (64%)
 Frame = +2

Query: 74  KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 250
           KQ VDLG           PAE+W   D +DED  VWEDNW+DD ++DDF+ QLR +LEK
Sbjct: 5   KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAELEK 62


>AC073230-1|AAQ93368.1|   70|Homo sapiens unknown protein.
          Length = 70

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 31/59 (52%), Positives = 38/59 (64%)
 Frame = +2

Query: 74  KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 250
           KQ VDLG           PAE+W   D +DED  VWEDNW+DD ++DDF+ QLR +LEK
Sbjct: 5   KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAELEK 62


>U97670-1|AAC78729.1|  258|Homo sapiens eukaryotic translation
           initiation factor eIF3, p35 subunit protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +2

Query: 134 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 265
           + WG ED +DEDV   +DNW+DD  +     +++ ++ K+ ++K
Sbjct: 37  DRWGGED-EDEDV---KDNWDDDDDEKKEEAEVKPEV-KISEKK 75


>U05237-1|AAA97522.1|  810|Homo sapiens FAC1 protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 149 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 268
           ED D E+    ED+ ED++ +DD +    +++E   D  S
Sbjct: 9   EDGDAEETQDSEDDEEDEMEEDDDDSDYPEEMEDDDDDAS 48


>AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger
           transcription factor protein.
          Length = 2764

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 149 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 268
           ED D E+    ED+ ED++ +DD +    +++E   D  S
Sbjct: 9   EDGDAEETQDSEDDEEDEMEEDDDDSDYPEEMEDDDDDAS 48


>AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger
           transcription factor protein.
          Length = 2781

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 149 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 268
           ED D E+    ED+ ED++ +DD +    +++E   D  S
Sbjct: 9   EDGDAEETQDSEDDEEDEMEEDDDDSDYPEEMEDDDDDAS 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,971,518
Number of Sequences: 237096
Number of extensions: 572529
Number of successful extensions: 1707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)