Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_C15
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    30   0.25 
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    26   5.5  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   5.5  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   7.2  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    25   9.5  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    25   9.5  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 239 LEQEIFLNYS*DKILHIWNGQLILNSL 159
           L ++IF+  S DK++ IWNG+ ++ S+
Sbjct: 146 LGEDIFITGSADKLIKIWNGEKLVKSI 172


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 389 RVSYNGPYQIVNGF-PLNPLGRTGICGRGVLGRWGPNHAADPIISRWKRLDNGNMAVGVN 565
           RV+  G Y+  +GF  + P+G T +    ++    P  + + ++ R K L     AV  N
Sbjct: 410 RVALLGRYE--HGFMSMIPVGATNV--GSIVINCDPTLSTNRLVLRKKSLGTFQEAVYKN 465

Query: 566 NKPILQFIAIKRGD 607
             P+L  + + RG+
Sbjct: 466 ASPVLDGMPVSRGE 479


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 374 DGNISRVSYNGPYQIVNG 427
           DGN+ R++Y+G   + NG
Sbjct: 197 DGNVQRLTYDGTVDVFNG 214


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
 Frame = -2

Query: 651 SPGSTIPPGIA---HSPVS----PRFIAINC-----NIGLLFTPTAIFPLSSLFQRLIIG 508
           +P ST+PPG +    +P S    P  IA        N+ L+   TA+ PLS     ++  
Sbjct: 205 TPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLS--IPNVLPF 262

Query: 507 SAA*LGPHRPKTPRPQIPVRPRG 439
           +AA   P  P  P   +P+ P G
Sbjct: 263 TAAQHFPGMPAMPMMNVPMGPGG 285


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 233 VPDDKVDWSTEYKQYNPPNYTFPGLHGKPYAD 328
           V   K DW    K++   N   PG HG  + +
Sbjct: 224 VDSGKFDWKKNSKRFPEFNEPHPGYHGMVFTE 255


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 348 LGSPISGSAYGFPCKPGNV*LGGLYCLYSVDQSTLSSGTGNLFKLLLG 205
           +GS I G  Y     P N+ +   Y +YS   ++ S+G   +F+LLLG
Sbjct: 387 IGSAIMGGGYIMTSNPLNMYVVDSYGIYS---ASASAGV-KIFQLLLG 430


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 348 LGSPISGSAYGFPCKPGNV*LGGLYCLYSVDQSTLSSGTGNLFKLLLG 205
           +GS I G  Y     P N+ +   Y +YS   ++ S+G   +F+LLLG
Sbjct: 387 IGSAIMGGGYIMTSNPLNMYVVDSYGIYS---ASASAGV-KIFQLLLG 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,175
Number of Sequences: 5004
Number of extensions: 64050
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)