Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_C15
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-4|AAC46768.2| 260|Caenorhabditis elegans Nudix family pr... 173 9e-44
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 51 8e-07
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ... 51 8e-07
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 36 0.019
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 36 0.019
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 34 0.077
Z81066-7|CAB02973.1| 244|Caenorhabditis elegans Hypothetical pr... 31 0.54
AL022289-6|CAA18377.1| 244|Caenorhabditis elegans Hypothetical ... 31 0.54
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 3.8
AL034393-10|CAA22323.1| 228|Caenorhabditis elegans Hypothetical... 28 6.7
Z83102-6|CAB05461.1| 417|Caenorhabditis elegans Hypothetical pr... 27 8.8
>U23484-4|AAC46768.2| 260|Caenorhabditis elegans Nudix family
protein 6 protein.
Length = 260
Score = 173 bits (421), Expect = 9e-44
Identities = 88/163 (53%), Positives = 107/163 (65%), Gaps = 5/163 (3%)
Frame = +2
Query: 179 VHSKCVGF---YPRSNLKRFPVPDDKVDWSTEYKQYNPPNYTFPGLHGKPYADPEIGDPN 349
VH KC Y SN+ R VPD+ V WS E+ YNPP +T P + G +ADPEI +
Sbjct: 4 VHQKCRNIDTVYLGSNIHRLNVPDNLVKWSQEWSGYNPPAHTDPKVDGAVWADPEIDEKT 63
Query: 350 FEPLWNSIDGNISRVSYNGPYQI--VNGFPLNPLGRTGICGRGVLGRWGPNHAADPIISR 523
F+P WN+IDG I+RVSY Y V PLNP+GRTG+ GRG+LGRWGPNHAADPI+SR
Sbjct: 64 FQPSWNAIDGKINRVSYVCQYSFDPVTLRPLNPIGRTGLSGRGLLGRWGPNHAADPIVSR 123
Query: 524 WKRLDNGNMAVGVNNKPILQFIAIKRGDTGEWAIPGGMVDPGE 652
DNG+ L+F+A++R D GEWAIPGGMVD GE
Sbjct: 124 TN--DNGD----------LEFVAVQRHDNGEWAIPGGMVDAGE 154
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
ZK512.3 protein.
Length = 1418
Score = 50.8 bits (116), Expect = 8e-07
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +2
Query: 203 YPRSNLKRFPVPDDKVDWSTEYKQYNPPNYTFPG----LHGKPYAD--PEIGDPNFEPLW 364
YP SN+ + V W+ +YNPP Y P + Y D E + +W
Sbjct: 1164 YPESNILKISVNMVSKPWTVLVPRYNPPFYCKPAEDFPSDVQKYVDIATEQNVGELKRIW 1223
Query: 365 NSIDGNISRVSYNGPYQI-VNGFPLNPLGRTGICGRGVLGRWGPN 496
S N S + +++ GFPLNP GRTG+ GRG R+G N
Sbjct: 1224 RSRQANDVTSSNDKCWKLSAAGFPLNPNGRTGMAGRGNHPRFGAN 1268
>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
homologous cationchannel protein protein.
Length = 1027
Score = 50.8 bits (116), Expect = 8e-07
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +2
Query: 203 YPRSNLKRFPVPDDKVDWSTEYKQYNPPNYTFPG----LHGKPYAD--PEIGDPNFEPLW 364
YP SN+ + V W+ +YNPP Y P + Y D E + +W
Sbjct: 773 YPESNILKISVNMVSKPWTVLVPRYNPPFYCKPAEDFPSDVQKYVDIATEQNVGELKRIW 832
Query: 365 NSIDGNISRVSYNGPYQI-VNGFPLNPLGRTGICGRGVLGRWGPN 496
S N S + +++ GFPLNP GRTG+ GRG R+G N
Sbjct: 833 RSRQANDVTSSNDKCWKLSAAGFPLNPNGRTGMAGRGNHPRFGAN 877
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/67 (38%), Positives = 32/67 (47%)
Frame = +2
Query: 296 FPGLHGKPYADPEIGDPNFEPLWNSIDGNISRVSYNGPYQIVNGFPLNPLGRTGICGRGV 475
FPGLHG+P + G+ F N IDG+ +G Y G P P G TG G
Sbjct: 520 FPGLHGEPGMRGQQGEVGF----NGIDGDCGEPGLDG-YPGAPGAPGAP-GETGFGFPGQ 573
Query: 476 LGRWGPN 496
+G GPN
Sbjct: 574 VGYPGPN 580
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/67 (38%), Positives = 32/67 (47%)
Frame = +2
Query: 296 FPGLHGKPYADPEIGDPNFEPLWNSIDGNISRVSYNGPYQIVNGFPLNPLGRTGICGRGV 475
FPGLHG+P + G+ F N IDG+ +G Y G P P G TG G
Sbjct: 777 FPGLHGEPGMRGQQGEVGF----NGIDGDCGEPGLDG-YPGAPGAPGAP-GETGFGFPGQ 830
Query: 476 LGRWGPN 496
+G GPN
Sbjct: 831 VGYPGPN 837
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 34.3 bits (75), Expect = 0.077
Identities = 26/67 (38%), Positives = 31/67 (46%)
Frame = +2
Query: 296 FPGLHGKPYADPEIGDPNFEPLWNSIDGNISRVSYNGPYQIVNGFPLNPLGRTGICGRGV 475
FPGLHG+P + G+ F N IDG+ +G Y G P P G TG G
Sbjct: 776 FPGLHGEPGMRGQQGEVGF----NGIDGDCGEPGLDG-YPGAPGAPGAP-GETGFGFPGQ 829
Query: 476 LGRWGPN 496
G GPN
Sbjct: 830 DGYPGPN 836
>Z81066-7|CAB02973.1| 244|Caenorhabditis elegans Hypothetical
protein F17B5.5 protein.
Length = 244
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 489 PHRPKTPRPQIPVRPRG 439
PHRP+ PRP P PRG
Sbjct: 52 PHRPRPPRPSRPTTPRG 68
>AL022289-6|CAA18377.1| 244|Caenorhabditis elegans Hypothetical
protein F17B5.5 protein.
Length = 244
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 489 PHRPKTPRPQIPVRPRG 439
PHRP+ PRP P PRG
Sbjct: 52 PHRPRPPRPSRPTTPRG 68
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 161 MNSILTVHSKCVGFYPRSNLKRFPVPDDKVDWSTEYKQYNPPNYTFPGLHGKPYADP--E 334
+++I+ S+ VGFYPRS P+ + ST + + ++ G Y P
Sbjct: 2185 IDAIINGGSRSVGFYPRSTFASNPL-TPPLGSSTPTHRPHVTDFRSAVDAGSSYRRPIST 2243
Query: 335 IGDPNFEPLWNSIDGNISRVSYNGP 409
I D E +N+ +S++ N P
Sbjct: 2244 IEDSGMEVTFNTYPPEVSKLQQNTP 2268
>AL034393-10|CAA22323.1| 228|Caenorhabditis elegans Hypothetical
protein Y18D10A.12 protein.
Length = 228
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 489 PHRPKTPRPQIPVRPR 442
PH P+ PRPQ PV+PR
Sbjct: 49 PHSPRPPRPQ-PVQPR 63
>Z83102-6|CAB05461.1| 417|Caenorhabditis elegans Hypothetical
protein C54C8.7 protein.
Length = 417
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 648 PGSTIPPGIAHSPVSPRFIAINCNIGLLFTP 556
P +T+PP + P S NCN GLL +P
Sbjct: 285 PCTTVPPPVTVRPSSTN--PSNCNAGLLMSP 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,887,434
Number of Sequences: 27780
Number of extensions: 367351
Number of successful extensions: 883
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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