Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_C14
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    29   0.32 
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    27   1.7  
SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit Mrp1...    26   3.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.0  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    25   9.0  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   9.0  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   9.0  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 309 PPHMTLFSVMYNVAVPNS*SFMRSLVDGDCSNTPSAGSA 193
           PP M  F   YN+A+PN+ ++ RS V    +   +A  A
Sbjct: 327 PPPMQSFRPNYNIAIPNAPAYYRSNVTAAAAANAAAAFA 365


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 293 NVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPSPALYM-VLNYELRLPELSQQAG 460
           N++       SG P+   N L  + S+ + ++EPS  L++  L++E    +L +  G
Sbjct: 193 NILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFG 249


>SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit
           Mrp17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -1

Query: 206 RPAQQNYLTPLPLLYFSIFK*MNTRKAFNKFLINDFQSLGLIVMRKNKNKAFQQPRFG 33
           RPA     T  P L  +I K        NK ++ D +S+GL  + K   K  Q   FG
Sbjct: 9   RPAANATRTSSPTLAMNIAKNCGRAILDNKGVVVDVESMGLKELAKPIKKLNQSYSFG 66


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 116 FLINDFQSLGLIVMRKNKNKAFQ 48
           FLI  F S G++  R++  KAF+
Sbjct: 642 FLIGQFHSQGVLGFRRDLGKAFE 664


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 260 LGTATLYITENNVIWGGGVSPSGNPAPTINLLY 358
           +G     +   N  + G +S S N  PT+NLL+
Sbjct: 1   MGETNSSLDNENTSFVGKLSSSSNVDPTLNLLF 33


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 3   ETNLVKCEFLSEAWLLKSFVFIFPHNY*AERLEVIY*KFVKRFSR---VHSFKY 155
           E+NL K + +SE  L K  +  F H    E L  +  K+  + S+   +H   Y
Sbjct: 819 ESNLQKSDLISEVKLEKPHIVTFQHVQSLEDLRGLLTKWYSKASKGPNIHDVNY 872


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 263 GTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPSPALYMVLN 421
           G  T  IT +N ++ G ++  G      + +YP +S +  + E S  LY+ ++
Sbjct: 45  GLTTNKITLDNPVYTGFLNTQGRVLFD-SFIYPKVSNNGTENERSDELYVEID 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,852
Number of Sequences: 5004
Number of extensions: 39824
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)