Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_C14
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68270-13|CAD21675.1| 225|Caenorhabditis elegans Hypothetical p... 43 1e-04
Z68270-12|CAA92573.1| 205|Caenorhabditis elegans Hypothetical p... 43 1e-04
Z68213-7|CAD21589.1| 225|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z68213-6|CAA92442.1| 205|Caenorhabditis elegans Hypothetical pr... 43 1e-04
AF202932-1|AAK69382.1| 225|Caenorhabditis elegans ICln2 protein. 43 1e-04
AF202931-1|AAK69381.1| 205|Caenorhabditis elegans ICln1 protein. 43 1e-04
Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 31 0.66
S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein. 31 0.66
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 31 0.66
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 28 4.7
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 28 4.7
X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic int... 27 8.1
>Z68270-13|CAD21675.1| 225|Caenorhabditis elegans Hypothetical
protein C01F6.8b protein.
Length = 225
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 176 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 355
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 356 YPSISLHAIQREPS 397
YP+I LHAI + S
Sbjct: 57 YPAIVLHAISTDVS 70
>Z68270-12|CAA92573.1| 205|Caenorhabditis elegans Hypothetical
protein C01F6.8a protein.
Length = 205
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 176 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 355
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 356 YPSISLHAIQREPS 397
YP+I LHAI + S
Sbjct: 57 YPAIVLHAISTDVS 70
>Z68213-7|CAD21589.1| 225|Caenorhabditis elegans Hypothetical
protein C01F6.8b protein.
Length = 225
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 176 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 355
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 356 YPSISLHAIQREPS 397
YP+I LHAI + S
Sbjct: 57 YPAIVLHAISTDVS 70
>Z68213-6|CAA92442.1| 205|Caenorhabditis elegans Hypothetical
protein C01F6.8a protein.
Length = 205
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 176 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 355
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 356 YPSISLHAIQREPS 397
YP+I LHAI + S
Sbjct: 57 YPAIVLHAISTDVS 70
>AF202932-1|AAK69382.1| 225|Caenorhabditis elegans ICln2 protein.
Length = 225
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 176 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 355
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 356 YPSISLHAIQREPS 397
YP+I LHAI + S
Sbjct: 57 YPAIVLHAISTDVS 70
>AF202931-1|AAK69381.1| 205|Caenorhabditis elegans ICln1 protein.
Length = 205
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 176 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 355
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 356 YPSISLHAIQREPS 397
YP+I LHAI + S
Sbjct: 57 YPAIVLHAISTDVS 70
>Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical
protein R53.3b protein.
Length = 322
Score = 30.7 bits (66), Expect = 0.66
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 288 SVMYNVAVPNS*SFMRSLVDGDCSNTPSAGSAKLLDTTTIVVLQYI 151
S+ YN AVP+ SF+R++ S++PS+ S D T Q +
Sbjct: 186 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFCQKV 231
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 30.7 bits (66), Expect = 0.66
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 288 SVMYNVAVPNS*SFMRSLVDGDCSNTPSAGSAKLLDTTTIVVLQYI 151
S+ YN AVP+ SF+R++ S++PS+ S D T Q +
Sbjct: 407 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFCQKV 452
>S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein.
Length = 360
Score = 30.7 bits (66), Expect = 0.66
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 288 SVMYNVAVPNS*SFMRSLVDGDCSNTPSAGSAKLLDTTTIVVLQYI 151
S+ YN AVP+ SF+R++ S++PS+ S D T Q +
Sbjct: 186 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFCQKV 231
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 30.7 bits (66), Expect = 0.66
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 288 SVMYNVAVPNS*SFMRSLVDGDCSNTPSAGSAKLLDTTTIVVLQYI 151
S+ YN AVP+ SF+R++ S++PS+ S D T Q +
Sbjct: 407 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFCQKV 452
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 203 PAQQNYLTPLPLLYFSIFK*MNTRKAFNKFLINDFQSLGLIVMRKNKNKAFQQPR 39
P Q N + + L+YF + K N L+ F+ LG + KNK +QQ R
Sbjct: 556 PLQNNLIELISLMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKNK-ALYQQDR 609
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 203 PAQQNYLTPLPLLYFSIFK*MNTRKAFNKFLINDFQSLGLIVMRKNKNKAFQQPR 39
P Q N + + L+YF + K N L+ F+ LG + KNK +QQ R
Sbjct: 556 PLQNNLIELISLMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKNK-ALYQQDR 609
>X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic
intermediate filamentprotein protein.
Length = 543
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 73 GKIKTKLFNSHASERNSHFTRLVS 2
G+++T L+NSH E+ SH V+
Sbjct: 517 GQVETFLYNSHGIEKRSHIQTTVA 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,882,723
Number of Sequences: 27780
Number of extensions: 221826
Number of successful extensions: 524
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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