Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_C12
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.063
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.25
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.77
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 2.4
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 3.1
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.1
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 5.5
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 26 5.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 5.5
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 7.2
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 7.2
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 25 7.2
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 9.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 9.5
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 9.5
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 32.3 bits (70), Expect = 0.063
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 242 QRMKKDAEYEEA-HKLKNMIRGLDDDEVGFLDLVERTKAKAAQQISIEEQKEMQEFRERV 418
Q KK E E A + L N+ L + +V R K +AA+ EEQK +EF ++
Sbjct: 94 QERKKRKELESAKNNLLNVYDSLKMQKASVSSMVNR-KQRAAK----EEQKIQEEFERQI 148
Query: 419 SNLAESEEMTRLRAQ 463
++L E ++ +L +
Sbjct: 149 TDLLEEQQQLKLEIE 163
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.25
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +2
Query: 185 REAPEEEYDSRPLFQRLEEQRMKKDAEYEEAHKLKNMIRGLDDDEVGFLDLVERTKAKAA 364
RE PE+ D + + + D + E+A K++ + DD+E+ LD +E +
Sbjct: 1274 RELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEGDAKTGDDNEMEDLDKMEDLEKPDY 1333
Query: 365 QQISIEEQKEMQEFRERVSNL 427
+ M E R R+ N+
Sbjct: 1334 AEEKDPYITVMSELRSRIQNV 1354
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.77
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Frame = +2
Query: 176 DQPREAPEEEYDSRPLFQRLEEQRMKKDAEYEEAHKLKNMIRG-LDDDEV--GFLDLV-E 343
D+ E EE+ D L +EQRM EE ++ + L + V + + V +
Sbjct: 513 DEDEEEDEEDVDEDELDLMTDEQRM------EEGRRMFQIFAARLFEQRVLQAYREKVAQ 566
Query: 344 RTKAKAAQQISIEEQKEMQEFRERVSNLAESEEMTRLRAQLALGKXXXXXXXXXKNKLQG 523
+ +AK ++I EE K QE RE + + E E+ + QL L K + +L
Sbjct: 567 QRQAKLLEEIE-EENKRKQE-RE-LKKIREKEKKRDKKKQLKLAKEEERQRREAE-RLAE 622
Query: 524 LIVRKRKASEIEEEIRKTR 580
+K ++ +EE RK R
Sbjct: 623 QAAQKALEAKRQEEARKKR 641
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 652 DIRNPLDFTGCQIGSKPLRWXWRAARLSD 566
D +N ++ G + S ++W WRA R D
Sbjct: 3114 DWKNNTEYHGYNVSSPQVQWFWRAVRSFD 3142
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/87 (24%), Positives = 41/87 (47%)
Frame = +2
Query: 164 VRTEDQPREAPEEEYDSRPLFQRLEEQRMKKDAEYEEAHKLKNMIRGLDDDEVGFLDLVE 343
V ED+ E +E+YD P + L E + D E EE + ++ +D+ LD
Sbjct: 123 VDEEDEEEEESDEDYDLSPTEEDLVE-TVSGDEESEEESESEDNSASEEDE----LDSAP 177
Query: 344 RTKAKAAQQISIEEQKEMQEFRERVSN 424
KA+ ++ + +E ++ + + +N
Sbjct: 178 AKKAQVKKKRTKDESEQEEAASPKKNN 204
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +2
Query: 188 EAPEEEYDSRPLFQRLEEQRMKKDAEYEEAHKLKNMIRGLDDDEVGFLDLVERTKAKAAQ 367
E PEE+ +S+ QR EE++ D ++ + +N++ D+ F D E + +A +
Sbjct: 263 EYPEEDPESKADRQRWEEEQAHLDRDWYMNSESQNLLG--DEVHNPFSDF-ETVEDRAHE 319
Query: 368 QISIEEQKE 394
IE+QK+
Sbjct: 320 AEFIEKQKK 328
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 567 ISSSISLALRFLTINPCSLFFCXXXXXXXVLPRAN*A-RRRVISSLSARL-DTRSLNSCI 394
I+ +++L FLT++PCS C L + +R S +SAR+ D +
Sbjct: 48 IAQKSNISLPFLTLSPCSFTICSLRARLHSLHGPSTVFLKRETSQISARVNDENGFTASP 107
Query: 393 SFCS 382
SF S
Sbjct: 108 SFFS 111
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 170 TEDQPREAPEEEYDSRPLFQRLEEQRMKKDAEY 268
T+D E+ EEE D +Q+ E +KD E+
Sbjct: 104 TQDSTSESSEEEEDGLESYQKQLEGLKEKDPEF 136
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 114 SEINPELIIIFYDTKTT 64
SE NP I++ Y TKTT
Sbjct: 64 SETNPRFILVSYPTKTT 80
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 386 QKEMQEFRERVSNLAESEEMTRLRAQLAL 472
++E+ FR+R S+ +SEE+ L+A+ A+
Sbjct: 458 REELPSFRKRSSSSRQSEEIASLQAENAV 486
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 99 QDLSQSLKYWNPDVVGKRNGIKYVQKTNQERHPKKSMIQGHCFNGLKSKE*RKMLNMRKR 278
Q+ ++ L+ + +V R ++YV K+NQE + +Q N E K N + +
Sbjct: 482 QEQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQLVNSSTELESVKSENEKLK 541
Query: 279 INL 287
L
Sbjct: 542 NEL 544
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = -3
Query: 623 LPNWFETTPLVLA 585
LPN++ET+PLVL+
Sbjct: 227 LPNYYETSPLVLS 239
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 574 LSDFLF----YFARLTLSDNQPLQFIFLCRCCCGLSFTQSQL 461
L +FLF YF + +D+ L F+F+ C LSF ++
Sbjct: 63 LFNFLFIAIPYFTEILYNDSSLLWFLFVSLCFITLSFQSLEI 104
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = -3
Query: 119 QTLR*ILNSLLYFMIQKPLELMLINKYQNISI*DKETI 6
Q + + +L ++PL++++IN ++ I++ D E +
Sbjct: 1185 QMAKTLAGNLAMVTCREPLQMLMINNFRTIALQDVENV 1222
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = -3
Query: 269 HIQHLSSFFALQAVETVALNH 207
++ H+S+ F L+ +E++ +NH
Sbjct: 209 NVDHISTTFGLELLESILVNH 229
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 550 RNRRGNQKDAPPAXTN 597
RNRR NQ +PPA ++
Sbjct: 495 RNRRNNQSSSPPAPSD 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,487
Number of Sequences: 5004
Number of extensions: 41970
Number of successful extensions: 151
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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