Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_C11
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 28 1.4
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 27 3.1
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 25 7.2
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 7.2
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 7.2
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 7.2
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 25 9.5
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 9.5
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 9.5
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 406 LECCFLFISFFGLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIRFS 269
L C F+F + G+ + L CLL + + + +L+ +GI F+
Sbjct: 19 LPCLFIFAAIVGMNLSLLYCLLKGWKNVMIWGIETMLFGAIGIFFA 64
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 403 ECCFLFISFFGLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIRFSL 266
E L +S + D L LL FL+ C KR ++ ++G FSL
Sbjct: 178 EASCLVLSRLFSRDDGLDLLLGFLHHCESSWFKRSIFYKIGCLFSL 223
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 309 CFCTKQEYRKFNKQRS*SI*RPKNE 383
C C++ Y FN RS PKNE
Sbjct: 152 CSCSQFSYNAFNSSRSFDEPMPKNE 176
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -3
Query: 359 SASLLVEFSVFLFRAKTQTPSLH*NGNSVFITLPSLSFTA-HGFQKRKIYGCT-NRCHKN 186
S SL+ + L + ++Q PSL NS+ +LP +S T G Y N +
Sbjct: 334 SKSLVAKNDQQLLQRQSQEPSLILRANSMKASLPDISNTGISGMNTNTTYNTNINNTPQT 393
Query: 185 KSSGIMKHGTQTI 147
SGI + + +I
Sbjct: 394 AISGITQDTSPSI 406
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 228 LESMGCKRQGRQRNENRIPISM*RRRLCFCTKQEYRKFNKQRS 356
LES +Q +RNE + +RLC + EY + + S
Sbjct: 170 LESEAIIKQNEERNEEMFQSLIEDKRLCSQVRTEYDRIRMEAS 212
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 135 LFFRFYYICTFRNVLIIPNFVFFTI 61
LFFR +++C+F L+ +F+F T+
Sbjct: 17 LFFRLFFVCSFFFPLLY-SFIFATL 40
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 485 FKMFIP*AIIS*LVFEPL--NYYSKQVGLGVLFSFYFVFWSSD 363
F F+P II L F L NY + V + + SF FV W SD
Sbjct: 306 FSSFLP-VIIKGLGFVGLQTNYMTIPVYIAGVISFLFVAWLSD 347
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 462 GLRYKHFEATVHDSIFFNYS-A*LYYIFQ*FL 554
G++Y+H+ T +F NY+ + Y +F+ +L
Sbjct: 284 GMKYRHYSPTAKVLLFVNYTESDAYGVFEKYL 315
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 508 FSIIVHSFITY-FNDFFLLI*SVFIIVG 588
FS+I SF+ N F LLI S+FII G
Sbjct: 523 FSLIPSSFVPMNRNIFLLLISSLFIIAG 550
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = +1
Query: 232 NPWAVKDKDGNVMKTEFPFQCKEGVCVFARNKNTENSTSNEADQSED 372
N W+ K D ++ + C+E + + KN E N +D
Sbjct: 108 NEWSKKTNDAQILLNSYETFCEEEALIEEKLKNIEIFEKNFVIMDDD 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,430
Number of Sequences: 5004
Number of extensions: 60939
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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