Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_C09
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 175 6e-45
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 174 1e-44
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 1.4
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 27 2.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.1
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 5.5
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.5
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 7.2
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 25 9.5
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 9.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 9.5
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 175 bits (425), Expect = 6e-45
Identities = 90/159 (56%), Positives = 109/159 (68%)
Frame = +3
Query: 168 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 347
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 348 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 527
PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 528 HTGRLLACVASRPXQCGRADGYILXGKELEFYLXKIKSK 644
GRL A V+SRP Q GR DGYIL G+EL FYL ++ K
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPK 199
Score = 49.2 bits (112), Expect = 5e-07
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +2
Query: 77 KRAPIRKKRKYELGRPAANTRLGPQRIHSV 166
KRA RKKRK+ELGR +NTR+GP+RIH V
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIHEV 46
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 28 MGISRDHWHKRRATG 72
MGI+RD HKR ATG
Sbjct: 1 MGITRDSRHKRSATG 15
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 174 bits (423), Expect = 1e-44
Identities = 90/159 (56%), Positives = 109/159 (68%)
Frame = +3
Query: 168 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 347
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 348 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 527
PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 528 HTGRLLACVASRPXQCGRADGYILXGKELEFYLXKIKSK 644
GRL A V+SRP Q GR DGYIL G+EL FYL ++ K
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPK 199
Score = 49.2 bits (112), Expect = 5e-07
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +2
Query: 77 KRAPIRKKRKYELGRPAANTRLGPQRIHSV 166
KRA RKKRK+ELGR +NTR+GP+RIH V
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIHEV 46
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 28 MGISRDHWHKRRATG 72
MGI+RD HKR ATG
Sbjct: 1 MGITRDSRHKRSATG 15
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 150 SVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA 329
+V +P +R T R+L +G S S ++ +TR V +AS+N L+ + ++
Sbjct: 534 TVISPQPTRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSS 590
Query: 330 IVVVDATPFRQWYE 371
V TPF +E
Sbjct: 591 STVQRQTPFHSPFE 604
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 639 T*SXLDRTRVLCLXRCNHRRDHTDXGDSPRKPANAPCGIALXE 511
T S D + CL R H+RD + + RK N G L E
Sbjct: 429 TNSGKDANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 228 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 401
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 402 K 404
+
Sbjct: 310 Q 310
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 367 YHCLNGVASTTTIAFLTRVFVRTNS 293
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 141 SVLSVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLV 320
SVL +S S+ + KYR + T WG E I+ + + E T L+
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187
Query: 321 KNAIVVV 341
+ A+ +V
Sbjct: 188 ELALTIV 194
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 289 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 203
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 570 QCGRADGYILXGKELEFYLXKIKSK 644
Q GR+ GY L E E YL I +K
Sbjct: 83 QLGRSRGYALYSDENEKYLWSINTK 107
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 213 CPDAAHGT*YF--HHVNETEWIR*GPSLVFAAGRPNSYFLFLRMGARFP 73
CPD + G Y V + ++R PS+++A ++ LF+R+ ++P
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYP 355
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 186 TKYRALRLDTGNFSWGSECSTRKTRI 263
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,252
Number of Sequences: 5004
Number of extensions: 48363
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -