Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_C03
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    70   2e-13
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    42   5e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    40   3e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    34   0.014
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    33   0.025
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    31   0.10 
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    31   0.10 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.18 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    29   0.41 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    28   0.94 
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    27   1.2  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   3.8  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   8.8  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 33/67 (49%), Positives = 44/67 (65%)
 Frame = +1

Query: 304 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 483
           G++S WRGN ANV+RYFPTQALNFAFKDK+K++F G   ++  + ++F            
Sbjct: 86  GVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GYKKERDGYAKWFAGNLASGGAAGA 144

Query: 484 TSLCFVY 504
            SL FVY
Sbjct: 145 ASLLFVY 151



 Score = 61.3 bits (142), Expect = 8e-11
 Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
 Frame = +3

Query: 129 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 305
           F  DF+ GG+SAAVSKTA APIERVKLL+Q Q  + +      RYKGI + F R   E+G
Sbjct: 27  FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86



 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +3

Query: 129 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQG 305
           FA +  +GG + A S   V  ++  +  L     S +   ++++ G+VD + +  +  G
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDG 190


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 20/54 (37%), Positives = 35/54 (64%)
 Frame = +3

Query: 144 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQG 305
           L+GG++A VS+TAV+P+ER+K++ QVQ+       ++ Y  +    V+I   +G
Sbjct: 25  LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREG 71



 Score = 32.7 bits (71), Expect = 0.033
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 304 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 399
           GL+ F+RGN  N +R FP  A+ FA  +  KQ
Sbjct: 71  GLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQ 102


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 21/52 (40%), Positives = 31/52 (59%)
 Frame = +3

Query: 135 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRI 290
           K  +AGG +  V+K+ VAP++RVK+L Q  H S +  A  R+ G+  A   I
Sbjct: 19  KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHI 69


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 33.9 bits (74), Expect = 0.014
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 117 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLL 215
           DP      F++GGI+  VS+T  AP++R+K++L
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML 155



 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +3

Query: 141 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 236
           +LAGG++ +V++  + P++ +K  +Q   +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 33.1 bits (72), Expect = 0.025
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 141 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 305
           FL+GG++A  + T   P E +K   Q+Q  ++K   + + YK +  AF  I + +G
Sbjct: 27  FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEG 82


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 120 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 299
           PV   + +++G IS   +   V P+E V++ LQ+Q   K +     Y G  D   +I  +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163

Query: 300 QG 305
            G
Sbjct: 164 YG 165



 Score = 29.9 bits (64), Expect = 0.23
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 126 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 302
           +F KDFLA G+S  V++  V  P + VK+ LQ Q     I     Y   +D   +I K +
Sbjct: 16  SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69

Query: 303 G 305
           G
Sbjct: 70  G 70


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 144 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGSP 311
           ++GG+S A++ +   P++ VK LLQ +  S  I   ++ KG +D    I    G P
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIP 263


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 78  VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 218
           V +T +N  SN   P   +  F+AGG++  +   A AP++ VK  LQ
Sbjct: 32  VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 144 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 233
           LAGGIS+ + +  +AP + +K+ +Q+   S
Sbjct: 21  LAGGISSVICRFMIAPFDVIKIRMQITQSS 50


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 135 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 224
           KD +AGG +   S   VAP++ VK   Q Q
Sbjct: 7   KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 304 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKK 426
           G+   +RG    ++ Y P+ ++ F   +K K +F  GV+KK
Sbjct: 66  GIAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF--GVNKK 104


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 132 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQ 302
           A   L G  +       V P E +K+ LQ V++ SK       Y G VD F +I K++
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQE 155


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 283 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 176
           T+ + + +  WSA I +LT C    SLT S+  T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 511 SRGTRSTERWLRRHHRRPDYQRSNARTASSCQHRR 407
           SR +RS     R  HR  DY RS   ++   + RR
Sbjct: 155 SRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRR 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,614
Number of Sequences: 5004
Number of extensions: 31517
Number of successful extensions: 127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)