Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_C01
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.9  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   8.9  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   8.9  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   8.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 152 DLNHNIVKRQKLYNGGQCIKLCLYRIDF 69
           D  +  +K +++YN  QC K C  R+D+
Sbjct: 780 DAKYLEIKCKRIYNEKQCCKNCA-RVDY 806


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 321 HTGGLDNEKITSGLWKEMIS 380
           H GG+ ++ +TS  W ++ S
Sbjct: 175 HHGGIKSDSVTSNAWWDVHS 194



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 164 TSYSDLNHNIVKRQKLYNGGQ 102
           T YS L H++     L + GQ
Sbjct: 213 TDYSSLTHSLAASNHLLSSGQ 233


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 472 LPYHFVMKTVWQLKCNFV 525
           LP+HF  ++ + ++C  V
Sbjct: 39  LPHHFTKRSFFDIQCKGV 56


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 472 LPYHFVMKTVWQLKCNFV 525
           LP+HF  ++ + ++C  V
Sbjct: 39  LPHHFTKRSFFDIQCKGV 56


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 472 LPYHFVMKTVWQLKCNFV 525
           LP+HF  ++ + ++C  V
Sbjct: 39  LPHHFTKRSFFDIQCKGV 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,780
Number of Sequences: 336
Number of extensions: 3328
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)