Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_C01
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611...    28   5.7  
03_01_0034 + 318432-318825,318902-319851                               28   5.7  
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635...    28   5.7  
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349     28   5.7  
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20...    28   7.5  
04_04_0209 + 23607749-23607893,23607990-23608043,23608156-236084...    28   7.5  

>05_04_0306 +
           20058640-20059159,20060406-20060819,20060921-20061190,
           20062179-20062849
          Length = 624

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 218 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 135
           LD +  YD C   L  +  S+ DLNH I
Sbjct: 382 LDNEALYDICFRTLKLTTPSFGDLNHLI 409


>03_01_0034 + 318432-318825,318902-319851
          Length = 447

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 218 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 135
           LD +  YD C   L  +  S+ DLNH I
Sbjct: 202 LDNEALYDICFRTLKLTTPSFGDLNHLI 229


>01_06_1060 +
           34162161-34162554,34162613-34162675,34163262-34163531,
           34163944-34164623
          Length = 468

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 218 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 135
           LD +  YD C   L  +  S+ DLNH I
Sbjct: 223 LDNEALYDICFRTLKLTTPSFGDLNHLI 250


>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
          Length = 447

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 218 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 135
           LD +  YD C   L  +  S+ DLNH I
Sbjct: 202 LDNEALYDICFRTLKLTTPSFGDLNHLI 229


>11_01_0027 -
           199196-199396,199514-199651,200207-200284,200419-200604,
           200754-200846,201665-201731,202374-202675
          Length = 354

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 230 ASSLKISPVILWSIQWASM*KLFYRLRMVQPHWRT--RQREDNKWPLERND 376
           ASS+ ++    W + WA+   +F+ L ++   WR   R    N   +ER++
Sbjct: 69  ASSIDLAWAWAWPLYWAAQGTMFWALFVLGHDWRISHRTHHQNHGHIERDE 119


>04_04_0209 +
           23607749-23607893,23607990-23608043,23608156-23608433,
           23609524-23609894,23610033-23610096,23610472-23610603
          Length = 347

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 161 MLRRSLKPSNNNHNGPVHRAVNFASSLKISPVILW 265
           + RR ++PSNN  N P   AV   ++ + SP+  W
Sbjct: 111 LARRFIRPSNNKENVPPVWAVKATATKRRSPLPDW 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,729,983
Number of Sequences: 37544
Number of extensions: 325239
Number of successful extensions: 739
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)